BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	720,946	C→T	intergenic (+106/+110)	ybfK → / ← kdpE	uncharacterized protein/response regulator in two‑component regulatory system with KdpD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	720,946	0	C	T	100.0%	622.0 / NA	187	intergenic (+106/+110)	ybfK/kdpE	uncharacterized protein/response regulator in two‑component regulatory system with KdpD
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (81/106); total (81/106)

Only 100 of 187 total aligned reads displayed.

AAGGTGAAGATATTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTCAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATAAAAGGCAGGCTGT  >  NC_000913/720849‑721041

aaGGTGAAGATATTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAg                                                                                               <  2:550379/100‑1 (MQ=255)

  ggTGAAGATATTCTATCCAGGAAATACGGTTGAACTGTGAATGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTa                                                                                             <  1:3067951/100‑1 (MQ=255)

  ggTGAAGATATTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTa                                                                                             <  2:2017338/100‑1 (MQ=255)

   gTGAAGATATTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTaa                                                                                            >  1:2878685/1‑100 (MQ=255)

   gTGAAGATATTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTaa                                                                                            <  1:3445474/100‑1 (MQ=255)

   gTGAAGATATTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTaa                                                                                            <  1:936686/100‑1 (MQ=255)

     gAAGATATTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAata                                                                                          >  1:1195075/1‑100 (MQ=255)

      aaGATATTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAatat                                                                                         >  1:3079255/1‑100 (MQ=255)

       aGATATTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAAtata                                                                                        >  1:2478941/1‑100 (MQ=255)

       aGATATTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAAtata                                                                                        >  2:1700/1‑100 (MQ=255)

       aGATATTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAAtata                                                                                        <  1:1431975/100‑1 (MQ=255)

       aGATATTCTATACAGGAAATACGGTTGAACTGTGAAAGTAATAAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAAtata                                                                                        <  1:1474074/100‑1 (MQ=255)

          tatTCTATCCAGTAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAat                                                                                           <  1:2934367/94‑1 (MQ=255)

          tatTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATaaaa                                                                                     >  2:3075573/1‑100 (MQ=255)

           atTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAat                                                                                    >  2:1486797/1‑100 (MQ=255)

           atTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAat                                                                                    <  1:1364085/100‑1 (MQ=255)

           aatCTATCAAAAAAATACGGTTAAACTGTGAAAATAAAAAAAAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATaaaa                                                                                     <  1:2338228/97‑1 (MQ=255)

            ttCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAata                                                                                   >  2:1127348/1‑100 (MQ=255)

            ttCTATCCAAGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAata                                                                                   <  1:2739384/100‑1 (MQ=255)

              cTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATAtt                                                                                 >  1:2079390/1‑100 (MQ=255)

              cTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATAtt                                                                                 >  1:41058/1‑100 (MQ=255)

              cTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAAT‑AAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTg                                                                                >  1:576445/1‑100 (MQ=255)

               tATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTg                                                                                <  1:1701004/100‑1 (MQ=255)

                 tCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGaa                                                                              <  2:1760176/100‑1 (MQ=255)

                  ccAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAAt                                                                             >  2:1605938/1‑100 (MQ=255)

                   cAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGa                                                                               >  1:3313974/1‑97 (MQ=255)

                   cAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAAtt                                                                            >  1:2547867/1‑100 (MQ=255)

                    aGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAAt                                                                             <  1:1391642/98‑1 (MQ=255)

                    aGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTg                                                                           <  2:323079/100‑1 (MQ=255)

                     ggAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGt                                                                          >  1:899187/1‑100 (MQ=255)

                       aaaTACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTa                                                                        <  1:1052992/100‑1 (MQ=255)

                          tACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTAttt                                                                     >  1:745768/1‑100 (MQ=255)

                            cGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTAttttt                                                                   <  2:240483/100‑1 (MQ=255)

                            cGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTAttttt                                                                   >  2:3174423/1‑100 (MQ=255)

                            cGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTAttttt                                                                   <  1:1058480/100‑1 (MQ=255)

                              gTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTtg                                                                  <  1:1144936/99‑1 (MQ=255)

                              gTTGAACTGTGAAGGTGAAAAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTtgt                                                                 <  1:437719/100‑1 (MQ=255)

                               ttGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTtgtg                                                                <  1:2249793/100‑1 (MQ=255)

                                tGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTtgtgt                                                               >  1:1288290/1‑100 (MQ=255)

                                 gAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTtgtgtg                                                              <  2:721761/100‑1 (MQ=255)

                                 gAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTtgtgtg                                                              >  2:571817/1‑100 (MQ=255)

                                 gAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTtgtg                                                                <  2:1629421/98‑1 (MQ=255)

                                   aCTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGtgtt                                                            >  1:346285/1‑100 (MQ=255)

                                       tgAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATTAGCTTTTTACTTAGTAATATAAAATATTGATTTGTTATTTTTGTGTGTTGttt                                                        <  1:2022188/100‑1 (MQ=255)

                                        gAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTa                                                       >  1:1369155/1‑100 (MQ=255)

                                        gAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTa                                                       >  2:3277254/1‑100 (MQ=255)

                                         aaGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTaa                                                      <  2:2878731/100‑1 (MQ=255)

                                         aaGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTaa                                                      <  1:1253737/100‑1 (MQ=255)

                                          aGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAg                                                     <  1:1349148/100‑1 (MQ=255)

                                          aGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAg                                                     <  2:1195090/100‑1 (MQ=255)

                                          aGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAg                                                     <  2:3372229/100‑1 (MQ=255)

                                           ggTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGa                                                    <  2:1352961/100‑1 (MQ=255)

                                             tGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGAtn                                                  <  1:2185700/100‑2 (MQ=255)

                                              gATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATaa                                                 >  2:2956109/1‑100 (MQ=255)

                                              gATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATa                                                  >  1:3274996/1‑99 (MQ=255)

                                               aTCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATaaa                                                >  2:1320118/1‑100 (MQ=255)

                                                 cAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTTTGTTGTTTAAGAt                                                   >  1:3237766/1‑95 (MQ=255)

                                                 cAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATaaaaa                                              >  2:359234/1‑100 (MQ=255)

                                                 cAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATaaaaa                                              >  1:2414005/1‑100 (MQ=255)

                                                  aaTAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAg                                             >  2:2561327/1‑100 (MQ=255)

                                                   aTAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGc                                            <  1:739292/100‑1 (MQ=255)

                                                   aTAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGc                                            >  2:631190/1‑100 (MQ=255)

                                                    tAAAAAATGATCAATCTTAATTTATTTAATGATGAACTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTG‑TTAAGATAAAAAg                                             >  1:3015467/1‑97 (MQ=255)

                                                    tAAAAAATGATCAATCTTAATTTATTTAATGATCAGATTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTtaaaataaaa                                               >  1:2294115/1‑96 (MQ=255)

                                                     aaaaaaTGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCg                                          <  1:2498035/100‑1 (MQ=255)

                                                       aaaaTGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGta                                        >  1:1821534/1‑100 (MQ=255)

                                                           tGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGtattta                                    >  1:893595/1‑100 (MQ=255)

                                                            gATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGtatttat                                   <  1:2618500/100‑1 (MQ=255)

                                                            gATCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTAGTTTAAGATGAAAAGCCGtatttat                                   <  1:3077432/100‑1 (MQ=255)

                                                             aTCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGtatttatt                                  <  2:662386/100‑1 (MQ=255)

                                                             aTCAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTAAAAAAAAAAAAAAGCCGtatttatt                                  <  1:609019/100‑1 (MQ=255)

                                                              tCAATATTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATttatta                                 <  1:2294435/100‑1 (MQ=255)

                                                               cAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATttattat                                >  2:496959/1‑100 (MQ=255)

                                                               cAATCTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATttatta                                 <  1:3403553/99‑1 (MQ=255)

                                                                   cTTAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTAc                             >  1:2615482/1‑99 (MQ=255)

                                                                     tAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGc                          <  2:272127/100‑1 (MQ=255)

                                                                     tAATTTATTTAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTAAAGATAAAAAGCCGTATTTATTATTACGGc                          <  1:3056290/100‑1 (MQ=255)

                                                                       atttatttAATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCtt                        >  2:2593209/1‑100 (MQ=255)

                                                                         ttatttaATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTAATAATAAATACGGCtttt                      <  1:997173/100‑2 (MQ=38)

                                                                           atttaATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTttaat                    <  2:1918303/100‑1 (MQ=255)

                                                                            tttaATGATGATCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTAATAATAAATACGGCtttttat                   <  2:2478974/100‑5 (MQ=25)

                                                                            tttaATGATGAGCTTTTTATTTAGTAATATAAAATATTGATTTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTttaatt                   <  1:3461186/100‑1 (MQ=255)

                                                                             ttaATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTttaatta                  >  1:19367/1‑100 (MQ=255)

                                                                             ttaATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTttaatta                  >  2:2270002/1‑100 (MQ=255)

                                                                             ttaATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTttaatta                  <  2:19367/100‑1 (MQ=255)

                                                                             ttaATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTAATAATAAATACGGCtttttatc                  <  2:2980413/100‑6 (MQ=25)

                                                                              taATGATGAGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTttaattaa                 <  1:496954/100‑1 (MQ=255)

                                                                                 tgatgaGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTAATAATAAATACGGCtttttatcttaa              <  2:2603343/100‑10 (MQ=21)

                                                                                  gatgaGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATaaa             <  2:873123/100‑1 (MQ=255)

                                                                                  gatgaGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTAATAATAAATACGGCtttttatcttaaa             <  2:3069790/100‑11 (MQ=21)

                                                                                   atgaGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATaaaa            <  2:1063185/100‑1 (MQ=255)

                                                                                    tgaGCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATAAAag           >  1:1987665/1‑100 (MQ=255)

                                                                                       gCTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATAAAaggca        >  2:2652310/1‑100 (MQ=255)

                                                                                        cTTTTTACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATAAAaggca        >  1:1523738/1‑99 (MQ=255)

                                                                                          ttttACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATAAAaggcaggc     <  2:2944137/100‑1 (MQ=255)

                                                                                          ttttACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATAAAaggcaggc     <  2:526174/100‑1 (MQ=255)

                                                                                          ttttACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATAAAaggcaggc     <  1:3334111/100‑1 (MQ=255)

                                                                                           tttACTTAGTAATATAAAATATTGATTTGTTATTTTGGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATAAAAGGCAGGCt    <  2:899199/100‑1 (MQ=255)

                                                                                            ttACTTAGTAATATAAAATATTGAATTGTTATTTGTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATACAAGGCAGGCTg   <  1:1827640/100‑1 (MQ=255)

                                                                                             tACTTAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATAAAAGGCAGGCTGt  <  1:1628934/100‑1 (MQ=255)

AAGGTGAAGATATTCTATCCAGGAAATACGGTTGAACTGTGAAGGTGATCAATAAAAAATGATCAATCTTAATTTATTTAATGATGAGCTTTTTACTCAGTAATATAAAATATTGAATTGTTATTTTTGTGTGTTGTTTAAGATAAAAAGCCGTATTTATTATTACGGCTTTAATTAATAAAAGGCAGGCTGT  >  NC_000913/720849‑721041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`