| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,073,307 | Δ1 bp | 100% | coding (705/1149 nt) | rutA ← | pyrimidine oxygenase, FMN‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,073,305 | 0 | A | . | 60.3% | 74.0 / 229.1 | 121 | coding (707/1149 nt) | rutA | pyrimidine oxygenase, FMN‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (25/23); new base . (30/43); total (55/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.66e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.72e-01 | |||||||||||
Only 100 of 127 total aligned reads displayed.
GTCGGTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCGGCGCAGATCA > NC_000913/1073208‑1073404 | ggTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGaagccg > 1:1464154/1‑96 (MQ=255) ggTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGACCTGTATCATCCGCGCAGCGGTCGGGGCGaagccg > 1:3173622/1‑96 (MQ=255) gTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCg > 1:2905900/1‑100 (MQ=255) tCATCGGCAATCACCATACACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGCGCG‑AAGCCGTgg < 1:810162/99‑1 (MQ=255) cATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTggg < 1:2355617/100‑1 (MQ=255) cATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTggg < 2:2432065/100‑1 (MQ=255) cATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTggg > 2:1163792/1‑99 (MQ=255) cATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGgt > 2:1615410/1‑100 (MQ=255) aTCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGgtg > 2:3112605/1‑100 (MQ=255) tCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGgtg < 1:858565/99‑1 (MQ=255) cGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGgtgt < 2:439118/100‑1 (MQ=255) ggCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTa > 1:303704/1‑100 (MQ=255) cAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTAtt < 2:3022106/100‑1 (MQ=255) aTCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTa > 1:1805996/1‑100 (MQ=255) tCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACg > 1:1363243/1‑100 (MQ=255) cACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACg < 1:3278783/100‑1 (MQ=255) ccATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCt > 2:2102179/1‑100 (MQ=255) ccATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCt > 2:1685215/1‑100 (MQ=255) ccATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCt > 1:319917/1‑100 (MQ=255) cATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGTAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCt > 2:3189968/1‑100 (MQ=255) cATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCtt < 1:154944/100‑1 (MQ=255) cATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCACAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCtt < 1:197156/100‑1 (MQ=255) aTAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCtt > 1:1710271/1‑100 (MQ=255) tAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCttt > 2:704642/1‑100 (MQ=255) tAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTg < 2:1397929/100‑1 (MQ=255) aaaCAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGc < 2:1306477/100‑1 (MQ=255) aacaacACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGc < 2:1009225/100‑1 (MQ=255) acaacaCATAAGAGCCACCGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGcc > 1:188229/1‑100 (MQ=255) caacaCATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGa > 1:1041403/1‑100 (MQ=255) caacaCATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGa > 1:3179208/1‑100 (MQ=255) aacaCATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGaa < 1:511350/100‑1 (MQ=255) aacaCATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGaa < 2:419352/100‑1 (MQ=255) cacaTAAGAGCCAACGTCGCGTCCGGTTTTCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAAc < 1:2043300/100‑1 (MQ=255) cacaTAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAAc < 1:764429/100‑1 (MQ=255) caTAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACa > 2:1533114/1‑100 (MQ=255) caTAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAg > 1:312743/1‑100 (MQ=255) agagCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAg < 2:2912261/100‑1 (MQ=255) tagCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGt < 2:2573854/99‑1 (MQ=255) agCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGta > 1:2573834/1‑99 (MQ=255) gCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTg > 2:642052/1‑100 (MQ=255) gCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTg > 1:781943/1‑100 (MQ=255) gCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTg < 1:1211735/100‑1 (MQ=255) gCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGa > 1:2044562/1‑100 (MQ=255) ccAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCCGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGa < 1:1410102/99‑1 (MQ=255) aCGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATc < 1:243155/100‑1 (MQ=255) aCGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGATCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATc < 2:1872944/100‑1 (MQ=255) gTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCgg < 1:1435196/100‑1 (MQ=255) gTCGCGTCCGGTGTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAGAGCCGTGGGTGGCTTTACGCCTTTGCCGAAACAGAAGTTGACATCg < 1:1029996/100‑1 (MQ=255) tggcgTTCGGTTTGTGCTGCGGCCTGTTTCCTCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGc < 1:2175885/98‑1 (MQ=255) tCGCGTCCGGTTTGCTCTGCGGCCTGTTTTATCCGCGCAGCTGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGc < 1:472338/100‑1 (MQ=255) tCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGc < 1:2295790/100‑1 (MQ=255) tCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGc < 1:1280187/100‑1 (MQ=255) tCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATGTACGCCTTTGCCGAAACAGAAGTTGAAATCGGc < 1:1327003/100‑1 (MQ=255) cgcgTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGc < 2:480103/100‑1 (MQ=255) cgcgTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCa < 1:3174450/100‑1 (MQ=255) gcgTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCAt > 2:2253377/1‑100 (MQ=255) gTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATAC < 1:1635977‑M1/100‑1 (MQ=255) cGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGG > 2:554076‑M1/1‑100 (MQ=255) ggTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGG < 1:2662370‑M1/100‑1 (MQ=255) ggTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGG < 1:2324298‑M1/100‑1 (MQ=255) gCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGga > 2:2697438/1‑100 (MQ=255) gCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGgag < 2:1198209/100‑1 (MQ=255) tctGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGgaga > 2:13956/1‑100 (MQ=255) gCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACg > 1:1436861/1‑100 (MQ=255) gCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGc > 1:1921347/1‑100 (MQ=255) cGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGcc < 1:2730035/100‑1 (MQ=255) cGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGcc < 1:2730085/100‑1 (MQ=255) ggCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCa > 2:842147/1‑100 (MQ=255) ggCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCa > 2:839351/1‑100 (MQ=255) gCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAATGCCAt < 2:2266366/100‑1 (MQ=255) gCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCa < 1:3243964/99‑1 (MQ=255) gCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCAt > 1:2421550/1‑100 (MQ=255) gattCATCCGCGCGGCGGTCGGGGCG‑AAGCCTTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCa > 2:2285321/3‑100 (MQ=255) gTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGcc < 2:3359778/100‑1 (MQ=255) gTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCa > 2:1995748/1‑100 (MQ=255) ttCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGc > 2:2272680/1‑100 (MQ=255) cATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCg < 2:2879003/100‑1 (MQ=255) cATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCg > 2:570982/1‑100 (MQ=255) cATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCg > 1:1244212/1‑99 (MQ=255) aTCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGt > 1:1605028/1‑100 (MQ=255) aTCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGt > 1:2347302/1‑100 (MQ=255) aTCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTc < 2:2592567/100‑1 (MQ=255) tCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCg > 1:610155/1‑100 (MQ=255) tCCGCGCAGCGGTCGGGGCG‑AAGCCGTAGGTGTATTTACGCCTTGGCCGAAACAGAAGCTGAAAGCGGCATAACGGGCGGAGAACGCCATGCCAGCGTc < 1:209597/99‑1 (MQ=255) cgcgCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCt > 1:2003362/1‑100 (MQ=255) aGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTgc < 1:2759879‑M2/100‑3 (MQ=255) aGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCaaagcgacgctggcatggcgttctccgcc < 2:2463612‑M1/100‑30 (MQ=255) gCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTgcc > 2:96481‑M2/1‑97 (MQ=255) gCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTgcc > 2:1659633‑M2/1‑97 (MQ=255) gCGGTCGGGGCGAA‑GCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTgccc > 2:2181905‑M2/1‑96 (MQ=255) gCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCaaagcgacgctggcatggcgttctccgccc < 1:437402‑M1/100‑31 (MQ=255) ggTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTgcccg < 1:748708‑M2/100‑6 (MQ=255) gTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGACGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTgcccgg < 2:1141333‑M2/100‑7 (MQ=255) gTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCGgc < 1:2967275/100‑1 (MQ=255) tCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCGgcg < 2:461566/100‑1 (MQ=255) cGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCaaagcgacgctggcatggcgttctccgcccggta < 2:2435240‑M1/100‑35 (MQ=255) cGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCGgcg > 2:1686219/1‑100 (MQ=255) gggCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCaaagcgacgctggcatggcgttctccgcccggtatg < 2:2877446‑M1/100‑37 (MQ=255) gggCG‑AAGCCGTGGGTGTATTTACGCCGTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCaaagcgacgctggcatggcgtgctccgcccggtatgc < 1:675098‑M1/100‑38 (MQ=255) aaaGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCGGCGCAGATCa > 2:2766761/1‑100 (MQ=255) | GTCGGTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCGGCGCAGATCA > NC_000913/1073208‑1073404 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |