New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 20474	NA (NA)	18 (0.150)	6/168	NT	NA	noncoding (90/768 nt)	IS1	repeat region
	?	NC_000913	= 20485	NA (NA)					noncoding (79/768 nt)	IS1	repeat region

AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATG  >  NC_000913/20467‑20573        |                                                                                                    aGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTACATCAGTAAGTTGGCAGCATCaccta          >  1:618670/1‑99 (MQ=11) aGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCacctac         >  2:1747008/1‑100 (MQ=31)  gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCGTCATACACTAAATCAGTAAGTTGGCAGCATCacctacc        <  1:2083310/100‑1 (MQ=17)  gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCacctacc        <  1:1021387/100‑1 (MQ=32)  gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCacctacc        >  2:3205300/1‑100 (MQ=32)  gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGCAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCacctacc        <  2:135998/100‑1 (MQ=17)   tggCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCacctacct       >  2:2280863/3‑100 (MQ=18)    atcTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTc      <  1:129401/98‑1 (MQ=25)     gCTGGACAGGAGGAACAGCTGATAGAAACAGAAGCAAATGGAGCAGCTAAAAAACACCATCATACACTAAATCAGTAAGTTGGAAGCATGACCTACCTCa     >  1:161561/1‑100 (MQ=11)     gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCa     >  2:2224654/1‑100 (MQ=35)     gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCa     <  2:2967717/100‑1 (MQ=35)      cTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCaa    <  2:385061/100‑1 (MQ=38)       tGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATCCACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAt   <  1:826056/100‑1 (MQ=255)       tGAACAGGAGCGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAt   <  1:265321/100‑1 (MQ=255)        gAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCagat  >  2:129401/1‑97 (MQ=25)        |                                                                                                    AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATG  >  NC_000913/20467‑20573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.