BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	832289 =	NA (NA)	5 (0.040)	5/164	NT	NA	noncoding (1/98 nt)	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	832314 =	NA (NA)	5 (0.040)	5/164	NT	NA	noncoding (26/98 nt)	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 151 total aligned reads displayed.

TAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAAT  >  NC_000913/832215‑832413

tAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGcc                                                                                                     >  1:638784/1‑100 (MQ=255)

   aCCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTAc                                                                                                  >  1:1805719/1‑100 (MQ=255)

    ccTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACg                                                                                                 <  2:2960547/100‑1 (MQ=255)

      atgcggaaaaaatgctttatccggcctacaaaagcatgcaaattcaatatattgcagagtccacgtagGCCTGATGCGCCACGCTTATCAGGCCTACGTg                                                                                               >  1:614265‑M1/69‑100 (MQ=255)

       gCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGa                                                                                              >  2:1602128/1‑100 (MQ=255)

        ccGCTGCGCAGTAATCTTTTATGCCGGGCTCTGACCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGACCTACGTGaa                                                                                             >  1:2223041/1‑100 (MQ=255)

        ccGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGaa                                                                                             >  2:2098158/1‑100 (MQ=255)

         cGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCGGGCCTACGTGAAc                                                                                            <  1:3091576/100‑1 (MQ=255)

           cTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAActc                                                                                          <  2:707833/100‑1 (MQ=255)

            tGCGCAGTAATCTTTTATGCCGGACTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAActct                                                                                         >  2:1550412/1‑100 (MQ=255)

              cgcAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGc                                                                                       <  1:799774/100‑1 (MQ=255)

              cgcAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGc                                                                                       <  2:2164764/100‑1 (MQ=255)

               gcAGTAATCTTTTATGCCGGGCTATGCCCGGCATCATGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGc                                                                                       <  1:1475634/99‑1 (MQ=255)

                cAGTTATCTGTTATGCCGGGCTATGCCCGGCAGCAGGTTGATGAACAAACGCAAACCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGc                                                                                       <  1:3201416/98‑1 (MQ=25)

                   tAATCTTTTATGCCGGGCTATGCCCGGCATCAGACTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAatat                                                                                  >  1:1015910/1‑100 (MQ=255)

                   tAATCTTTTAAGCCGGGTTAAGCTCGGCATCAGGCTGATGAACATACGTAAAACGGCCTGTTGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAata                                                                                   <  1:1450043/99‑1 (MQ=25)

                    aaTCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAatata                                                                                 >  2:2860488/1‑100 (MQ=255)

                      tCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGTACAAAAGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAatatat                                                                                >  1:2182991/1‑99 (MQ=255)

                          ttATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAAt                                                                           <  2:436492/100‑1 (MQ=255)

                          tgaTGCCGGGCATAGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGaa                                                                            >  2:564160/3‑99 (MQ=25)

                            aTGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAAttt                                                                         >  2:3024201/1‑100 (MQ=255)

                             tGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTg                                                                        >  2:3079807/1‑100 (MQ=255)

                             tGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTg                                                                        <  1:2147582/100‑1 (MQ=255)

                             tGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTg                                                                        <  2:1712640/100‑1 (MQ=255)

                              gCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGc                                                                       >  2:2779017/1‑100 (MQ=255)

                              gCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGc                                                                       <  1:3037480/100‑1 (MQ=255)

                               ccGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCa                                                                      <  2:1095299/100‑1 (MQ=255)

                               ccGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCa                                                                      <  2:231063/100‑1 (MQ=255)

                               ccGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCa                                                                      >  2:1789997/1‑100 (MQ=255)

                               ccGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCa                                                                      <  2:1065477/100‑1 (MQ=255)

                               ccGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCCTATCAGTCCTACGTGAACCCTGCAATATATTGAATTTGCa                                                                      >  1:997152/1‑100 (MQ=255)

                                  ggCGATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATg                                                                    <  1:3357112/99‑1 (MQ=255)

                                     tATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCttt                                                                >  2:3327897/1‑100 (MQ=255)

                                        gCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGt                                                             <  1:1881823/100‑1 (MQ=255)

                                        gCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGt                                                             >  1:1240423/1‑100 (MQ=255)

                                        gCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGt                                                             <  2:3333475/100‑1 (MQ=255)

                                         cccGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTa                                                            >  1:1101267/1‑100 (MQ=255)

                                         cccGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTa                                                            >  2:2631215/1‑100 (MQ=255)

                                             gCATCAGGCTGATGAACAAACGCAAAACTGCCGGATGCGATACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGcc                                                        <  1:2381387/100‑1 (MQ=255)

                                                  aGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATa                                                   <  2:1207685/100‑1 (MQ=255)

                                                   ggCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATaa                                                  >  2:163610/1‑100 (MQ=255)

                                                    gCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGCATTTGCATGCTTTTGTAGGCCTGATAAg                                                 >  1:56120/1‑100 (MQ=255)

                                                     cTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAgg                                                >  2:2544301/1‑100 (MQ=255)

                                                      tgatgaACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGc                                               <  2:2525878/100‑1 (MQ=255)

                                                       gatgaACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGTCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCg                                              <  1:1161821/100‑1 (MQ=255)

                                                            aCAAACGCAAAACTGCCTGTTGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAc                                         <  2:2019107/100‑1 (MQ=255)

                                                            aCAAACGCAAAACTGCCTGATGCGTTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAc                                         <  1:2903160/100‑1 (MQ=255)

                                                            aCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAc                                         <  1:2631195/100‑1 (MQ=255)

                                                               aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgcc                                      <  1:1293325/100‑1 (MQ=255)

                                                               aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgcc                                      <  2:3268990/100‑1 (MQ=255)

                                                               aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgcc                                      <  1:8544/100‑1 (MQ=255)

                                                                gttcacgtaggcctgataagcgtagcgcatcaggcCTACGTGAACTCTGCAATATATTGAATTTGCATGCCTTTGTAGCCCGGATAAGGCGTTTAcgc                                       >  1:1068868‑M2/36‑98 (MQ=255)

                                                                 cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgccgc                                    >  2:1411138/1‑100 (MQ=255)

                                                                 cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgccgc                                    <  1:2289842/100‑1 (MQ=255)

                                                                 cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgcc                                      >  1:1036698/1‑98 (MQ=255)

                                                                 cGCAAAACTGCCTGATGCGCTACGCTTATCAGACCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTCTGTACGCCGGATAAGGCGTTTAcgccgc                                    >  1:1668037/1‑100 (MQ=255)

                                                                   cAACACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCGATATATTGAATTTGCATGCTTGTGTAGGCCGGATAAGGCGTTTAcccc                                      <  1:207817/96‑1 (MQ=17)

                                                                   cAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCAt                                  >  1:1812068/1‑100 (MQ=255)

                                                                     aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACATGAACTCTGAAATATATCGACTTTGCATGCTATTGTAGGCCGGATAAGGCGTTTACGCCGCATc                                 >  1:443048/1‑99 (MQ=14)

                                                                      aaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCg                               >  2:2362057/1‑100 (MQ=255)

                                                                       aCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                              <  1:3259337/100‑1 (MQ=255)

                                                                       aCTGCCTGATGCGCTACGCTTATCAGCCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                              <  2:843212/100‑1 (MQ=255)

                                                                        aggcctgataagcgtagcgcatcaggcCTACATAATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                             >  2:2858469‑M2/28‑100 (MQ=255)

                                                                         tGCCTGATGCGCTACGCTTATCAGGCCTACGTGACCTCTGCAATATATTGATTTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                            <  1:2017809/100‑1 (MQ=255)

                                                                         tGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGcc                            <  1:2727074/100‑2 (MQ=14)

                                                                         tGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCAGATGCGGCGTAAACGCCTTATCCGGcc                            <  2:723575/100‑2 (MQ=17)

                                                                          gcctgataagcgtagcgcatcaggcCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAt                           >  2:452335‑M2/26‑100 (MQ=255)

                                                                          GCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTGTGCAATATATTGTATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAt                           <  1:2280831‑M1/100‑1 (MQ=255)

                                                                          GCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAt                           <  1:2528472‑M1/100‑1 (MQ=255)

                                                                          GCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAt                           <  2:1735838‑M1/100‑1 (MQ=255)

                                                                          GCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAt                           <  2:706131‑M1/100‑1 (MQ=255)

                                                                             TGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTc                        <  2:2639617‑M1/100‑1 (MQ=255)

                                                                             TGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTc                        <  2:1223644‑M1/100‑1 (MQ=255)

                                                                             TGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTc                        >  1:2537421‑M1/1‑100 (MQ=255)

                                                                             TGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCATTTc                        <  1:340257‑M1/100‑1 (MQ=255)

                                                                              GATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTca                       >  1:602148‑M1/1‑100 (MQ=255)

                                                                               ATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcac                      >  1:249581‑M1/1‑100 (MQ=255)

                                                                               ATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcac                      >  2:599683‑M1/1‑100 (MQ=255)

                                                                                  cgcTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCacaa                    >  1:1075136/1‑99 (MQ=255)

                                                                                  cgcTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGACATTTCacaa                    >  2:3061458/1‑99 (MQ=255)

                                                                                   gcTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCacaaca                  >  2:1372376/1‑100 (MQ=255)

                                                                                       agcgcatcaggcCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCa              >  1:2110462‑M2/13‑100 (MQ=255)

                                                                                        gCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCAc             <  2:404137/100‑1 (MQ=255)

                                                                                         cTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACt            <  2:2674302/100‑1 (MQ=255)

                                                                                         cTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACt            >  2:2726211/1‑100 (MQ=255)

                                                                                          ttATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACtt           <  1:435756/100‑1 (MQ=255)

                                                                                           tATCAGGCCTACGTGAACTCTGCACTATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCCTCCGCCATTTCACAACAAGCACTTg          >  1:1285548/1‑100 (MQ=255)

                                                                                           tATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTg          <  2:3230140/100‑1 (MQ=255)

                                                                                             tcaggcCTACGTGCACGCTGCAATATGTTGAATTCGCATGCTTTTGTAGTCCGGATAAGGCGTTTGCGCCGCATCCGGCATTTCACAACAAGCACTTGTc        <  1:2849436‑M2/94‑1 (MQ=255)

                                                                                             tcaggcCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTc        <  2:413074‑M2/94‑1 (MQ=255)

                                                                                             tcaggcCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTc        <  2:1467688‑M2/94‑1 (MQ=255)

                                                                                             tcaggcCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTc        <  2:724923‑M2/94‑1 (MQ=255)

                                                                                              cagtcCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACTTCACAACAAGCACTTGTCa       >  1:730402‑M2/6‑100 (MQ=255)

                                                                                              caggcCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCa       >  1:1400185‑M2/6‑100 (MQ=255)

                                                                                              caggcCTACGTGAACTCTGCAATATATTAAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCa       >  1:3294579‑M2/6‑100 (MQ=255)

                                                                                               aggcCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAg      <  1:482006‑M2/96‑1 (MQ=255)

                                                                                                 gcCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAg      <  1:2059923‑M2/96‑1 (MQ=255)

                                                                                                  cCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCaa   >  1:1103275‑M2/2‑100 (MQ=255)

                                                                                                  cCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCaa   >  1:302602‑M2/2‑100 (MQ=255)

                                                                                                  cCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCaa   >  2:243844‑M2/2‑100 (MQ=255)

TAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAAT  >  NC_000913/832215‑832413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.