New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2539608 =NA (NA)5 (0.040) 5/166 NT NA noncoding (2/36 nt) REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2539638 = NA (NA)noncoding (32/36 nt) REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 195 total aligned reads displayed.

CTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGAG  >  NC_000913/2539539‑2539736
                                                                                                   |                                                                                                  
cTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGt                                                                                                    >  2:1971067/1‑100 (MQ=255)
cTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGt                                                                                                    >  1:471569/1‑100 (MQ=255)
  tCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCt                                                                                                  <  1:2713720/100‑1 (MQ=255)
   cACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTa                                                                                                 >  1:1185634/1‑100 (MQ=255)
    aCCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATACGACGCTTGCGCGTCTTATCAGGTCTAc                                                                                                >  1:1929913/1‑100 (MQ=255)
           gCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTAc                                                                                         <  2:1184274/100‑1 (MQ=255)
               aTTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAAc                                                                                     <  2:2621114/100‑1 (MQ=255)
               aTTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAAc                                                                                     >  1:1539835/1‑100 (MQ=255)
               aTTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAAc                                                                                     >  1:1710055/1‑100 (MQ=255)
                ttGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAAcc                                                                                    <  1:771044/100‑1 (MQ=255)
                  gCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCtt                                                                                  >  2:2510850/1‑100 (MQ=255)
                  gCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCtt                                                                                  >  2:1112761/1‑100 (MQ=255)
                    cTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGc                                                                                >  1:804972/1‑100 (MQ=255)
                    cTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTATTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGc                                                                                >  1:2427724/1‑100 (MQ=255)
                       ttgtttgtTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCAt                                                                             >  2:289709/1‑100 (MQ=255)
                        tgtttgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCAtt                                                                            <  1:1790570/100‑1 (MQ=255)
                         gtttgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTa                                                                           <  1:1903618/100‑1 (MQ=255)
                         gtttgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTa                                                                           >  1:1824780/1‑100 (MQ=255)
                         gtttgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTa                                                                           >  2:3187320/1‑100 (MQ=255)
                           ttgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTaaa                                                                         >  2:1329102/1‑100 (MQ=255)
                            tgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTaaaa                                                                        <  2:1470031/100‑1 (MQ=255)
                            tgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTaaaa                                                                        >  2:1243041/1‑100 (MQ=255)
                            tgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTaaaa                                                                        >  2:2067223/1‑100 (MQ=255)
                            tgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTaaaa                                                                        <  2:2465588/100‑1 (MQ=255)
                             gttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTaaaaa                                                                       >  2:882821/1‑100 (MQ=255)
                                 tAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGccc                                                                   <  2:3242793/100‑1 (MQ=255)
                                   aTGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCgg                                                                 <  2:2030041/100‑1 (MQ=255)
                                   aTGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCgg                                                                 >  1:1054220/1‑100 (MQ=255)
                                    tGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGa                                                                >  2:3257153/1‑100 (MQ=255)
                                      tACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATc                                                              <  1:488767/100‑1 (MQ=255)
                                      tACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATc                                                              >  1:1440129/1‑100 (MQ=255)
                                      tACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATc                                                              >  2:2357766/1‑100 (MQ=255)
                                       aCTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATcg                                                             >  2:1161491/1‑100 (MQ=255)
                                        cTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCTCGTATTATCAGGTCTACAGGGTACAAACCTTGCCATTAAAAAGCCCGGATcgc                                                            >  1:224197/1‑100 (MQ=255)
                                        cTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATcgc                                                            >  2:1705879/1‑100 (MQ=255)
                                         tctcGATCTCTATCCATACGTGGTGTTGCCTAATGCGACGCTTGAGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCCTTAAAAAGCCCGGATcgcg                                                           <  1:265332/97‑1 (MQ=255)
                                          ttaatggcaaggtttgtaacctgtagacctgataagacgcgcaagcgtcgcatcaggTCTCCAGGATACAAACCTAGCCATTAAAAAGCCCGGAACGCgg                                                          >  1:426970‑M2/58‑100 (MQ=255)
                                          cACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGccccg                                                                 >  1:3210400/1‑91 (MQ=255)
                                          cACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCgg                                                          <  1:3305367/100‑1 (MQ=255)
                                          cACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCgg                                                          <  1:1335061/100‑1 (MQ=255)
                                          cACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCgg                                                          <  1:2067210/100‑1 (MQ=255)
                                            cGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGa                                                        >  2:2175752/1‑100 (MQ=255)
                                             gATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGaa                                                       >  2:2986684/1‑100 (MQ=255)
                                                cgctATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAgcg                                                    <  1:3132174/98‑1 (MQ=255)
                                                 tctAACCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTATAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAgcgc                                                   >  1:1987378/1‑100 (MQ=255)
                                                  ctATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAgcgc                                                   >  1:2107911/1‑99 (MQ=255)
                                                  ctATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGcc                                                  <  2:3132531/100‑1 (MQ=255)
                                                  ctATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGcc                                                  <  2:1015727/100‑1 (MQ=255)
                                                   tATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAgcgcat                                                 <  2:2282002/100‑3 (MQ=255)
                                                      ccATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCTGATCGCGGGAAGCGCCTCCg                                              >  1:1623201/1‑100 (MQ=255)
                                                       ttgtaacctgtagacctgataagacgcgcaagcgtcgcatcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCgg                                             >  2:2867396‑M2/45‑100 (MQ=255)
                                                       cATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCgg                                             >  2:1368640/1‑100 (MQ=255)
                                                         tACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGc                                           <  2:2571974/100‑1 (MQ=255)
                                                           cGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGt                                         <  1:570275/100‑1 (MQ=255)
                                                            gtggtgTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGtt                                        <  2:716239/100‑1 (MQ=255)
                                                             tggtgTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGttt                                       >  1:1286903/1‑100 (MQ=255)
                                                             tggtgTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGttt                                       <  2:193873/100‑1 (MQ=255)
                                                              ggtgTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTa                                      >  2:603020/1‑100 (MQ=255)
                                                               gtgtTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTaa                                     <  2:3307415/100‑1 (MQ=255)
                                                               gtgtTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTaa                                     <  2:1653567/100‑1 (MQ=255)
                                                                  ttGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACAt                                  <  2:220774/100‑1 (MQ=255)
                                                                  agacctgataagacgcgcaagcgtcgcatcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACAt                                  >  1:1558675‑M2/34‑100 (MQ=255)
                                                                   gacctgataagacgcgcaagcgtcgcatcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACAt                                  >  1:3015866‑M2/33‑99 (MQ=255)
                                                                    gCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTc                                >  2:1853910/1‑100 (MQ=255)
                                                                      CTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCAc                              >  2:1822999‑M1/1‑100 (MQ=255)
                                                                      CTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCAc                              >  2:367877‑M1/1‑100 (MQ=255)
                                                                       tgataagacgcgcaagcgtcgcatcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGGTTAACATTCACt                             >  1:2622278‑M2/29‑100 (MQ=255)
                                                                       TGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACt                             >  2:804975‑M1/1‑100 (MQ=255)
                                                                          TGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCaa                          <  2:1886736‑M1/100‑1 (MQ=255)
                                                                          TGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCaa                          <  2:2717265‑M1/100‑1 (MQ=255)
                                                                           gCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAAc                         <  2:3001949/100‑1 (MQ=255)
                                                                           gCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCAATCAAc                         >  2:2802986/1‑100 (MQ=255)
                                                                            ngACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGACGCGCCTCCGGGCGTTTAACCTTCAc                              >  1:1752294/2‑94 (MQ=255)
                                                                            cGACGCTTGCGCGTCTTATCAGGTCTACAGGTTCCAAACCTTGCCATTAAACAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAAcc                        >  1:2017557/1‑100 (MQ=255)
                                                                            cGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAAcc                        <  1:3176986/100‑1 (MQ=255)
                                                                            cGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAAcc                        <  1:1280382/100‑1 (MQ=255)
                                                                            cGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAAcc                        >  1:2981815/1‑100 (MQ=255)
                                                                               cGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTAt                     >  1:521025/1‑100 (MQ=255)
                                                                               cGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATAGCGGGAAGCGCCTCCGGGCGTTTAAGATTCACTCAACCTAt                     >  2:3334904/1‑100 (MQ=255)
                                                                                  ttGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAg                  >  2:2089004/1‑100 (MQ=255)
                                                                                   tGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAgg                 >  2:1618395/1‑100 (MQ=255)
                                                                                    gcgcGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGgc                >  2:273058/1‑100 (MQ=255)
                                                                                       cgTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCt             >  1:2175461/1‑100 (MQ=255)
                                                                                         tCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCCGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCttt           <  1:2533174/100‑1 (MQ=255)
                                                                                          cTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTtg          >  1:2593702/1‑100 (MQ=255)
                                                                                           ttATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTtgt         <  2:859143/100‑1 (MQ=255)
                                                                                            tATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGTGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTtgtg        >  1:1043747/1‑100 (MQ=255)
                                                                                            tATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTtgtg        >  2:2616943/1‑100 (MQ=255)
                                                                                            tATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTtgtg        >  1:3321215/1‑100 (MQ=255)
                                                                                             atcaagTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGTAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGc       <  1:696336‑M2/94‑1 (MQ=255)
                                                                                              tcaggTCTACATGTTACAAACATTACAAATAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCg      <  1:734913‑M2/95‑1 (MQ=255)
                                                                                              tcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCg      <  2:3383143‑M2/95‑1 (MQ=255)
                                                                                               caggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCga     >  2:2098593‑M2/5‑100 (MQ=255)
                                                                                               caggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCga     >  2:646769‑M2/5‑100 (MQ=255)
                                                                                               caggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCga     >  1:2363342‑M2/5‑100 (MQ=255)
                                                                                               caggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCga     >  1:247547‑M2/5‑100 (MQ=255)
                                                                                                aggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCgag    <  2:2804916‑M2/97‑1 (MQ=255)
                                                                                                aggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCgag    <  2:1755450‑M2/97‑1 (MQ=255)
                                                                                                 ggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCgaga   >  1:2909270‑M2/3‑100 (MQ=255)
                                                                                                  gTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGagag  >  1:1966546‑M2/2‑100 (MQ=255)
                                                                                                   |                                                                                                  
CTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGAG  >  NC_000913/2539539‑2539736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.