New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3139625 =NA (NA)12 (0.110) 9/164 NT NA noncoding (5/83 nt) REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3139655 = NA (NA)noncoding (35/83 nt) REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 177 total aligned reads displayed.

ATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGTG  >  NC_000913/3139556‑3139753
                                                                                                   |                                                                                                  
gcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                    >  2:1578936‑M1/70‑100 (MQ=255)
gcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                    >  1:644050‑M1/70‑100 (MQ=255)
    cGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCg                                                                                                >  1:2554396/1‑100 (MQ=255)
     tgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGt                                                                                               >  2:3385317‑M1/65‑100 (MQ=255)
      gatgattagctttcgtaggcctgataaggcgcggcagcgtcgcagcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTg                                                                                              >  2:188747‑M1/64‑100 (MQ=255)
      agaCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTg                                                                                              >  2:3129327/1‑100 (MQ=255)
       gaCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGc                                                                                             >  2:3026657/1‑100 (MQ=255)
       gaCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGc                                                                                             <  2:13386/100‑1 (MQ=255)
       gaCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGc                                                                                             <  1:476741/100‑1 (MQ=255)
       atgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGc                                                                                             >  2:1165700‑M1/63‑100 (MQ=255)
        tgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGca                                                                                            <  1:2566100‑M1/39‑1 (MQ=255)
        gcggaTACGGAAGATAAGCGGAAGGGGTAAAGTTTGGGGTGCTTCGCTGCAGGCCATCCAGGCCGGATAAGGCGTTCACTCCGCATCCGGCAATc                                                                                                 <  1:2921252/91‑1 (MQ=18)
        aCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGca                                                                                            <  2:2684169/100‑1 (MQ=255)
         cGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGcac                                                                                           <  1:440916/100‑1 (MQ=255)
         cGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGcac                                                                                           >  2:531127/1‑100 (MQ=255)
         cGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGcac                                                                                           <  2:1787769/100‑1 (MQ=255)
         cGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGcac                                                                                           >  2:601535/1‑100 (MQ=255)
            aTACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAAt                                                                                        >  2:2564194/1‑100 (MQ=255)
               cGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGcc                                                                                     <  2:527463/100‑1 (MQ=255)
                ggAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCt                                                                                    <  1:1673433/100‑1 (MQ=255)
                 gAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTg                                                                                   <  2:2571024/100‑1 (MQ=255)
                    gATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATg                                                                                <  2:2196298/100‑1 (MQ=255)
                      tAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCg                                                                              >  2:1727359/1‑100 (MQ=255)
                      tAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCg                                                                              >  2:2793540/1‑100 (MQ=255)
                              aGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGcc                                                                      <  2:2819731/100‑1 (MQ=255)
                               ggggTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCcg                                                                     >  1:209460/1‑100 (MQ=255)
                                 ggTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCcgcg                                                                   >  2:1032447/1‑100 (MQ=255)
                                 ggTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCcgcg                                                                   <  2:264604/100‑1 (MQ=255)
                                 ggTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCcgcg                                                                   <  2:48877/100‑1 (MQ=255)
                                   tAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTc                                                                 <  2:1881473/100‑1 (MQ=255)
                                   tAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTc                                                                 <  1:38503/100‑1 (MQ=255)
                                    aaGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGATGCTGCCGCGTCt                                                                <  2:2233492/100‑1 (MQ=255)
                                     ggcgatGGGGTTCGTCGCAGCAGGCCATCCTGTGAGGATAAGGCGTTGACGCCACATCCGGCAATGGTGCACAATGCCTGCTGCGACCCTGCTGTGTc                                                                 >  1:2015654/6‑98 (MQ=12)
                                      gggTTGGTGTTTGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTa                                                              >  1:1779492/1‑100 (MQ=255)
                                       ggTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTAt                                                             >  1:3128428/1‑100 (MQ=255)
                                       ggTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTAt                                                             >  1:1023767/1‑100 (MQ=255)
                                        gTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATc                                                            <  2:250063/100‑1 (MQ=255)
                                         ttGGTGTTGGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCa                                                           >  1:2601207/1‑100 (MQ=255)
                                           ggTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAgg                                                         >  1:2322019/1‑100 (MQ=255)
                                           ggTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAgg                                                         >  1:2321981/1‑100 (MQ=255)
                                            gtgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGc                                                        <  2:1328832/100‑1 (MQ=21)
                                             tgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGcc                                                       >  1:746249/1‑100 (MQ=255)
                                              gtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGAGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGcc                                                       >  1:1635954/1‑99 (MQ=255)
                                                tcgtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTAc                                                    <  2:3015836/100‑1 (MQ=255)
                                                 cgtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACg                                                   <  2:572347/100‑1 (MQ=255)
                                                    cgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGaaa                                                >  1:3014092/1‑100 (MQ=255)
                                                    cgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGaaa                                                >  2:3167993/1‑100 (MQ=255)
                                                     ggcattgtgcacgattgccggatgcggcgtgaacgccttatccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAg                                               >  2:2566120‑M2/47‑100 (MQ=255)
                                                     gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGaaa                                                <  1:531124/99‑1 (MQ=255)
                                                     gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAg                                               <  1:1727348/100‑1 (MQ=255)
                                                     gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAg                                               >  1:1401238/1‑100 (MQ=255)
                                                     gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAg                                               >  2:2806366/1‑100 (MQ=255)
                                                      cagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGc                                              <  1:1889023/100‑1 (MQ=255)
                                                      cagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGc                                              >  2:1557035/1‑100 (MQ=255)
                                                      cagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGc                                              <  1:2919991/100‑1 (MQ=255)
                                                        gcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTa                                            >  2:927700/1‑100 (MQ=255)
                                                         caAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTaa                                           <  2:2009458/100‑1 (MQ=255)
                                                           aGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAatc                                         <  2:271904/100‑1 (MQ=255)
                                                           aGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAatc                                         >  2:263459/1‑100 (MQ=255)
                                                             gcacgattgccggatgcggcgtgaacgccttatccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAatcat                                       >  2:1165700‑M2/39‑100 (MQ=255)
                                                              cacgattgccggatgcggcgtgaacgccttatccggcAATCGTGCACAATGCCTGCTGCGACGCTGCCGCGCCTTATCAGGCCTACGAAAGCTAatcatc                                      >  2:188747‑M2/38‑100 (MQ=255)
                                                              cATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAatcatc                                      >  1:1395242/1‑100 (MQ=255)
                                                               aTCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAAtcatca                                     <  1:1228391/100‑1 (MQ=255)
                                                                 ccAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcg                                   >  2:588791/1‑100 (MQ=255)
                                                                  cAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgc                                  >  2:1238649/1‑100 (MQ=255)
                                                                  cAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTGATCAGGCCTACGAAAGATAATCATCAcgc                                  >  2:1209983/1‑100 (MQ=255)
                                                                   aGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgcg                                 >  1:1524417/1‑100 (MQ=255)
                                                                   aGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCACGTCTTATCAGGCCTACGAAAGCTAATCATCAcgcg                                 >  2:3227827/1‑100 (MQ=255)
                                                                    tgccggatgcggcgtgaacgccttatccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACgcgc                                >  2:1578936‑M2/32‑100 (MQ=255)
                                                                    ggCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACgcgc                                >  2:2430485/1‑100 (MQ=255)
                                                                    ggCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACgcgc                                <  2:237026/100‑1 (MQ=255)
                                                                    ggCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACgcgc                                >  1:2910555/1‑100 (MQ=255)
                                                                     gccggatgcggcgtgaacgccttatccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCt                               >  2:795246‑M2/31‑100 (MQ=255)
                                                                      CCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTg                              <  1:1387720‑M1/100‑1 (MQ=255)
                                                                      CCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTg                              <  1:2244249‑M1/100‑1 (MQ=255)
                                                                       CGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTgg                             <  1:2450127‑M1/100‑1 (MQ=255)
                                                                        GGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGt                            <  2:2749431‑M1/100‑1 (MQ=255)
                                                                         GATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTa                           >  2:1684553‑M1/1‑100 (MQ=255)
                                                                           TAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAAt                         >  2:1817960‑M1/1‑100 (MQ=255)
                                                                           TAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAAt                         >  1:3059975‑M1/1‑100 (MQ=255)
                                                                            aaGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATg                        <  2:2534500/100‑1 (MQ=255)
                                                                              ggCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATg                        >  1:642412/1‑98 (MQ=255)
                                                                              ggCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTc                      >  2:1865771/1‑100 (MQ=255)
                                                                              ggCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTc                      >  2:567047/1‑100 (MQ=255)
                                                                              ggCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTc                      >  2:2123687/1‑100 (MQ=255)
                                                                               gcgtgaacgccttatccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCg                     <  1:1165696‑M2/80‑1 (MQ=255)
                                                                                cGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGt                    >  2:145651/1‑100 (MQ=255)
                                                                                cGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGt                    <  2:1401244/100‑1 (MQ=255)
                                                                                 gTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTa                   >  2:2570759/1‑100 (MQ=255)
                                                                                  ttCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTaa                  >  2:192677/1‑100 (MQ=255)
                                                                                  ttCACGCCGCATCCGGCAATCGTGCACAACGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGt                    <  1:227626/98‑1 (MQ=255)
                                                                                      cgccgcATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCa              <  1:3269119/100‑1 (MQ=255)
                                                                                       gccgcATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTCATGTCGTAATCCAt             >  1:3228409/1‑100 (MQ=255)
                                                                                           cATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTgg         >  2:3294596/1‑100 (MQ=255)
                                                                                             tccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGgcg       <  1:882410‑M2/94‑1 (MQ=255)
                                                                                             tccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGgcg       >  2:641376‑M2/7‑100 (MQ=255)
                                                                                              ccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGgcgc      >  1:741676‑M2/6‑100 (MQ=255)
                                                                                               cggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCa     <  1:237906‑M2/96‑1 (MQ=255)
                                                                                                  cAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGTg  <  1:2806343‑M2/99‑1 (MQ=255)
                                                                                                  cAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGTg  <  1:2177209‑M2/99‑1 (MQ=255)
                                                                                                   |                                                                                                  
ATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGTG  >  NC_000913/3139556‑3139753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.