New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3619655 =NA (NA)8 (0.070) 6/168 NT 100% coding (464/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3619677 = 0 (0.000)coding (486/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

GAGGACGGTTACAGCCGCAGCGAGTCACTGTGGCTGGTGCGCGGCGGCGTGGCGAAACTGGATGAAGGTCACCGGCTGGCCGCACTCTGGCAGGCGCTGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGT  >  NC_000913/3619579‑3619752
                                                                                                  |                                                                           
accgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGc                                                                            >  2:1404740‑M2/99‑100 (MQ=255)
accgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGc                                                                            >  2:2969360‑M2/99‑100 (MQ=255)
 ccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGcc                                                                           <  1:1128639‑M2/3‑1 (MQ=255)
 ccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGcc                                                                           <  2:861344‑M2/3‑1 (MQ=255)
  cgagcagccaccacggcccctgtggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCg                                                                          >  1:2239978‑M2/97‑100 (MQ=255)
  cgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCg                                                                          <  1:1271998‑M2/4‑1 (MQ=255)
  cgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCg                                                                          >  2:2344927‑M2/97‑100 (MQ=255)
  cgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCg                                                                          >  2:2213760‑M2/97‑100 (MQ=255)
  cgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacgtaagcggagttcttccggcagcgcctgccagagtgcggccaGcc                                                                           <  1:1647398‑M2/3‑1 (MQ=255)
   gagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCgg                                                                         <  2:2406205‑M2/5‑1 (MQ=255)
   gagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCgg                                                                         <  2:2238337‑M2/5‑1 (MQ=255)
   gagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCgg                                                                         >  2:203727‑M2/96‑100 (MQ=255)
   gagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCgg                                                                         >  1:964223‑M2/96‑100 (MQ=255)
   gagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaaacgtagttcttccggcagcgcctgccagagtgcggccaGCCgg                                                                         >  1:2374088‑M2/96‑100 (MQ=255)
     gcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgactgccagagtgcggccaGCCgg                                                                         <  1:1514412‑M2/5‑1 (MQ=255)
        gccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggaggtcttccggcagcgccttccagagtgcggcccgccggcgcc                                                                     >  1:2952706‑M2/91‑95 (MQ=255)
              acggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCGGAAGAACTCCGc                                                              <  1:1045825‑M2/16‑1 (MQ=255)
                                                  gcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCGGACGGACTCCGCTTAAGTCCGCCTCGTTATCTGGCGACAAACAGTCCg                          >  1:3025698‑M2/49‑100 (MQ=255)
                                                                   tcttccggcagcgcctgccagagtgcggccaGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGgct         >  1:2150827‑M2/32‑100 (MQ=255)
                                                                    cttccggcagcgcctgccagagtgcggccaGCCGGAAGAACTCTGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGgctg        >  1:2956778‑M2/31‑100 (MQ=255)
                                                                    cttccggcagcgcctgccagagtgcggccaGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGgctg        >  2:887511‑M2/31‑100 (MQ=255)
                                                                       ccggcagcgcctgccagagtgcggccaGCCGGAAGGACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTc     >  1:3309392‑M2/28‑100 (MQ=255)
                                                                          tccggcagcgcctgccagagtgcgGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTTGTGGCTGCTCGGt  >  1:1313938‑M2/25‑100 (MQ=255)
                                                                           ccggcagcgcctgccagagtgcgGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTcggc  >  1:618539‑M2/24‑98 (MQ=255)
                                                                                                  |                                                                           
GAGGACGGTTACAGCCGCAGCGAGTCACTGTGGCTGGTGCGCGGCGGCGTGGCGAAACTGGATGAAGGTCACCGGCTGGCCGCACTCTGGCAGGCGCTGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGT  >  NC_000913/3619579‑3619752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.