New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4554965 =127 (1.030)5 (0.040) 4/162 NT 4.3% coding (390/774 nt) uxuR fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor
?NC_000913 4554993 = 108 (0.960)coding (418/774 nt) uxuR fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor
Rejected: Frequency below cutoff threshold.

Only 100 of 161 total aligned reads displayed.

AGCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGC  >  NC_000913/4554894‑4555092
                                                                                                   |                                                                                                   
atgctgttatgcgttgcttcggcaatagcgagatggaactgcatgtcaccgctttcgctgctgcccggcgcACTGGAAGAGCGTGAACTGGCTTCCAGTg                                                                                                     >  1:768416‑M1/72‑100 (MQ=255)
agCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTg                                                                                                     <  2:2470993/100‑1 (MQ=255)
 gCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTgc                                                                                                    >  1:2899130/1‑100 (MQ=255)
  ggtgttatgcgttgcttcggcaatagcgagatggaactgcatgttgccgctttcgctgctgcccctcgcACTGTAAGAGCGTGAACTGGCTTCCAGTgcg                                                                                                   >  1:317771‑M1/70‑100 (MQ=255)
  gctgttatgcgttgcttcggcaatagcgagatggaactgcatgtcaccgctttcgctgctgcccggcgcACTGGAAGAGCGTGAACTGGCTTCCAGTgcg                                                                                                   >  1:74164‑M1/70‑100 (MQ=255)
  cAACATCGCCGAGCTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCACAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTgcg                                                                                                   >  2:1588623/1‑100 (MQ=255)
   aaCATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTgcgc                                                                                                  >  2:3085709/1‑100 (MQ=255)
    aCATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGcc                                                                                                 >  2:2162675/1‑100 (MQ=255)
      aTCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGcc                                                                                                 >  2:2035933/1‑98 (MQ=255)
      aTCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCgg                                                                                               <  1:3085683/100‑1 (MQ=255)
       tCGCCGCGTTTGCCGCGTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCggg                                                                                              <  1:2662841/100‑1 (MQ=255)
        cGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGgc                                                                                             >  2:3125971/1‑100 (MQ=255)
         gCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGgc                                                                                             >  1:3319235/1‑99 (MQ=255)
          ccGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGgcag                                                                                           >  1:1151619/1‑100 (MQ=255)
           cGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGgcagc                                                                                          <  2:1197593/100‑1 (MQ=255)
           cGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGgcagc                                                                                          <  2:165696/100‑1 (MQ=255)
           cGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCCTGAACTGGCTTCCAGTGCGCCGGgcagc                                                                                          <  1:2782722/100‑1 (MQ=255)
           cGAGTTCGCCGCTTTGCAGGCTACCCGCGAAGATATCATCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGgcagc                                                                                          <  1:2458914/100‑1 (MQ=255)
             aGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGcagcag                                                                                        <  1:3195258/100‑1 (MQ=255)
              tgcttcggcaatagcgagatggaactgcatgtcaccgctttcgctgctgcccggcgcACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCagcagc                                                                                       >  1:884334‑M1/58‑100 (MQ=255)
              gTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCagcagc                                                                                       <  1:1930427/100‑1 (MQ=255)
              gTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCagcagc                                                                                       <  2:187047/100‑1 (MQ=255)
               tttGCCGTTTTGCAGGCTCCCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAGCTGGAAGAGCGTGAACTTGCTTTCAGTGCGCCGGGCAGCAGCg                                                                                      <  1:2158708/100‑1 (MQ=255)
                ttGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGa                                                                                     >  1:1017151/1‑100 (MQ=255)
                ttGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGa                                                                                     >  2:2741867/1‑100 (MQ=255)
                  gCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGaca                                                                                   <  2:3144829/100‑3 (MQ=255)
                  gCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGaaa                                                                                   <  2:729768/100‑1 (MQ=255)
                   ccGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAg                                                                                  >  2:2110740/1‑100 (MQ=255)
                    cGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGc                                                                                 >  2:759513/1‑100 (MQ=255)
                    cGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGc                                                                                 >  2:1331837/1‑100 (MQ=255)
                     gCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCg                                                                                <  2:2902204/100‑1 (MQ=255)
                       tttGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGt                                                                              <  1:3123306/100‑1 (MQ=255)
                         tGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGa                                                                            <  1:1090843/100‑1 (MQ=255)
                         tGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGa                                                                            >  1:1449631/1‑100 (MQ=255)
                             ggCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATg                                                                        >  2:695209/1‑100 (MQ=255)
                                 aCCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGt                                                                    >  2:536463/1‑100 (MQ=255)
                                 aCCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGt                                                                    >  1:413981/1‑100 (MQ=255)
                                  cccGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGtt                                                                   >  1:2820997/1‑100 (MQ=255)
                                  cccGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGtt                                                                   >  1:61507/1‑100 (MQ=255)
                                   ccGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTc                                                                  <  2:2767716/100‑1 (MQ=255)
                                    cgcgAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTcc                                                                 >  2:3365972/1‑100 (MQ=255)
                                     gcgAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCa                                                                <  2:2343557/100‑1 (MQ=255)
                                          gATATCATCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCg                                                           <  1:2478264/100‑1 (MQ=255)
                                             ntCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCCTGAACTGGCTTCCAGTGCGCCGGGCCGCAGCGAAAGCGGTGACATGCACTACCAtctcacca                                                        >  1:1807039/2‑96 (MQ=255)
                                             atCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTa                                                        <  2:2869820/100‑1 (MQ=255)
                                               cGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTAtt                                                      <  2:2075821/100‑1 (MQ=255)
                                               cGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTAtt                                                      >  2:573665/1‑100 (MQ=255)
                                               cGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTAtt                                                      >  1:266510/1‑100 (MQ=255)
                                                gTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTg                                                     >  1:2630023/1‑100 (MQ=255)
                                                  cAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGcc                                                   <  1:1575162/100‑1 (MQ=255)
                                                        gctgctgcccggcgcactggaagccagttcacgctcttccagtGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCa                                             >  1:884334‑M2/44‑100 (MQ=255)
                                                         cGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCaa                                            <  2:2309420/100‑1 (MQ=255)
                                                          gTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCGGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAAc                                           <  1:1874669/100‑1 (MQ=255)
                                                          gTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAAc                                           >  2:849320/1‑100 (MQ=255)
                                                           tCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACg                                          <  2:649997/100‑1 (MQ=255)
                                                            cAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGc                                         >  2:1535131/1‑100 (MQ=255)
                                                            cAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGAAATTCCAACAAGATATTGCCGAAGCAACGc                                         <  1:2451849/100‑1 (MQ=255)
                                                             aGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCa                                        >  2:583266/1‑100 (MQ=255)
                                                             aGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCa                                        >  2:3380720/1‑100 (MQ=255)
                                                              ggCATTGCAACTGGAAGAGCGTGGACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCAt                                       >  1:828335/1‑100 (MQ=255)
                                                                cATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATaa                                     >  2:1990267/1‑100 (MQ=255)
                                                                  ttGCACCTGGGAGAGCGTGAACTGGCTTCGTGTGCGCCGCGCAGCAGCGAAAGCGGTGACATGCAGATCCATCTCGCTATTGCCGAAGCAACGCATAACa                                   <  1:2029086/100‑1 (MQ=255)
                                                                  ttGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACa                                   <  2:2677507/100‑1 (MQ=255)
                                                                   tGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAg                                  <  2:2958243/100‑1 (MQ=255)
                                                                   tGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAg                                  >  2:331367/1‑100 (MQ=255)
                                                                    cgcactggaagccagttcacgctcttccagtGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGc                                 >  1:74164‑M2/32‑100 (MQ=255)
                                                                     gcactggaagccagttcacgctcttccagtGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCa                                >  1:1044118‑M2/31‑100 (MQ=255)
                                                                     cAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCa                                <  1:1886686/100‑1 (MQ=255)
                                                                      cactggaagccagttcacgctcttccagtGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCAt                               >  1:768416‑M2/30‑100 (MQ=255)
                                                                          GGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCtg                           <  2:1317568‑M1/100‑1 (MQ=255)
                                                                           GAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCtgg                          >  2:2821020‑M1/1‑100 (MQ=255)
                                                                            AAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCtggt                         <  2:825306‑M1/100‑1 (MQ=255)
                                                                            AAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGAAACGCATAACAGCATGCtgg                          <  2:510236‑M1/99‑1 (MQ=255)
                                                                             AGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCtggtg                        <  2:1819185‑M1/100‑1 (MQ=255)
                                                                             AGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCtggtg                        >  2:2286825‑M1/1‑100 (MQ=255)
                                                                              GAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCtggtgg                       >  1:2642004‑M1/1‑100 (MQ=255)
                                                                               agCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGa                      >  1:1222493/1‑100 (MQ=255)
                                                                               agCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGa                      >  1:3217749/1‑100 (MQ=255)
                                                                                gCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAg                     <  1:227338/100‑1 (MQ=255)
                                                                                gCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAg                     >  2:354445/1‑100 (MQ=255)
                                                                                  gTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCt                   <  2:795675/100‑1 (MQ=255)
                                                                                   tGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTg                  <  2:2948915/100‑1 (MQ=255)
                                                                                    gAACTGGCTTCCAGTTCGCCGGGCAGTAGCGCAAGCGGTGACCTGTAAACGCAGCTCGCTATTGCCGACGAGCCGCATGACATCTGGCTGGTGGAGCTg                  >  1:1828684/1‑99 (MQ=255)
                                                                                    gAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTg                  <  1:1331519/99‑1 (MQ=255)
                                                                                      aCTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTc               >  2:1217129/1‑100 (MQ=255)
                                                                                       cTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTcc              >  2:1776947/1‑100 (MQ=255)
                                                                                        tGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACATCATGCTGGTGGAGCTGTTCCg             <  2:413983/100‑1 (MQ=255)
                                                                                        tGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCg             <  2:886736/100‑1 (MQ=255)
                                                                                         ggCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCg             <  2:1253093/99‑1 (MQ=255)
                                                                                          gCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTc           <  2:3133762/100‑1 (MQ=255)
                                                                                          gCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTc           >  1:2830998/1‑100 (MQ=255)
                                                                                           cttccagtGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGtt                >  1:1682889‑M2/9‑94 (MQ=255)
                                                                                           cttccagtGCGCCGGGCAGCAGCGAAAGCGATGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACCCATAACAGCATGCCGGTAGAGCTGTTCCGTCa          >  1:1460732‑M2/9‑100 (MQ=255)
                                                                                            ttCCAGTGCGCCGCGCAGCAGCGAAAGCGGTGACATGCAGTGCCATCTCGGTATTGCCGAAGCAACGGATAACAGCATGCTGGTGGAGATGTTCCGTCAg         <  1:1036881/100‑1 (MQ=255)
                                                                                                 gtGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTg    <  2:1865430‑M2/98‑1 (MQ=255)
                                                                                                 gtGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTg    <  1:354444‑M2/98‑1 (MQ=255)
                                                                                                  tGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTgg   <  2:828338‑M2/99‑1 (MQ=255)
                                                                                                   gcgcCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATGTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGc  >  1:2956272/1‑100 (MQ=255)
                                                                                                   gcgcCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGc  >  2:2635296/1‑100 (MQ=255)
                                                                                                   gcgcCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGc  <  1:1631823/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AGCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGC  >  NC_000913/4554894‑4555092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.