| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 497,139 | (T)5→6 | intergenic (+145/‑36) | htpG → / → adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 497,134 | 1 | . | T | 92.6% | 171.7 / 6.6 | 55 | intergenic (+140/‑41) | htpG/adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base T (25/25); total (26/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTCATCATCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGC‑T‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCAG > NC_000913/497035‑497228 | tttcATCATCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGc > 2:1121547/1‑100 (MQ=255) tcatcaTCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGC‑t‑t < 1:733490/100‑1 (MQ=255) tcatcTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGC‑t‑ttt‑t < 1:1490585/100‑1 (MQ=255) catcTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGC‑t‑ttt‑tt < 1:1022809/100‑2 (MQ=255) catcTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGC‑t‑ttt‑tt > 2:406346/1‑99 (MQ=255) tcTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGC‑t‑ttt‑ttca < 2:871170/100‑4 (MQ=255) tcTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGC‑t‑ttt‑ttca < 2:44815/100‑4 (MQ=255) aCTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑Caaaaaa < 1:654121/100‑1 (MQ=255) aCTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑Caaaaaa > 2:241412/1‑100 (MQ=255) cTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAAt < 1:1539942/100‑1 (MQ=255) cTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAAt > 1:6116/1‑100 (MQ=255) tttCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAAtt < 1:135415/100‑1 (MQ=255) ttCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTc < 1:171274/100‑1 (MQ=255) tCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAAt > 1:35530/1‑97 (MQ=255) tCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCg < 2:657175/100‑1 (MQ=255) ccGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGa < 2:1357596/100‑1 (MQ=255) ccGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGa > 2:94092/1‑100 (MQ=255) cGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGac < 1:1567974/100‑1 (MQ=255) cGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGac > 1:1282179/1‑100 (MQ=255) cGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGac > 1:1168309/1‑100 (MQ=255) cGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCAT‑TTT‑T‑AAAAAAATTCGac < 2:438473/100‑1 (MQ=255) cAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGacac > 2:274811/1‑100 (MQ=255) tctcGCCATTAACCGTCTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTa > 2:98283/1‑99 (MQ=255) tcGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTAGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAgg < 2:462635/100‑1 (MQ=255) cGCCATTAACCGTTTCAGCCTCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAggg > 2:963684/1‑100 (MQ=255) gCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAgggg > 1:800732/1‑100 (MQ=255) ccATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGa > 1:1019473/1‑100 (MQ=255) aTTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGAtt < 2:70856/100‑1 (MQ=255) ttAACCGTTTCAGCGCCAGGTTCCTTTCTTGAGGCAATAGCCTGTTGGTGGTATCGTTTATCGC‑T‑TTT‑TGCAAAAAATTCGACACATTTTAAGGGGAt < 2:772464/98‑1 (MQ=255) tttCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAAt < 1:1417346/100‑1 (MQ=255) tCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGc > 2:1203048/1‑100 (MQ=255) tCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGC‑T‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCg < 1:1121552/100‑1 (MQ=255) cAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCg < 2:1160129/100‑1 (MQ=255) cAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCg < 2:13548/100‑1 (MQ=255) aGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGt > 2:1145374/1‑100 (MQ=255) ccccAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTAt < 1:1327331/100‑1 (MQ=255) cAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCAt < 1:372894/100‑1 (MQ=255) aGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAATATTCGACACATTTTAAGGGGATTTTCGCAATTCGTATc > 2:796691/1‑97 (MQ=255) tGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTg < 1:30472/100‑1 (MQ=255) ttCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTgg > 1:1281036/1‑100 (MQ=255) tCTTGAGTCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGgc < 1:427059/100‑1 (MQ=255) tCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGgc < 2:668847/100‑1 (MQ=255) tGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGgcgc > 2:212543/1‑99 (MQ=255) gAGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTc > 2:1264087/1‑100 (MQ=255) aGGCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTcc < 1:834542/100‑1 (MQ=255) gCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CACAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCgg > 2:1470508/1‑100 (MQ=255) gCAATCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCgg < 2:233434/100‑1 (MQ=255) tCGCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGAGACATTTTAAGGGGATTTTCGCAATACGTATCATTCTGCGTGGCGCTCCGGgcgc > 2:1575241/1‑100 (MQ=255) gCCTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑TTTTTTTTTTTAAACATTTTAAGGGGATATTCTCAATTCTTATAATTTTGGTTGGCGCTCCTGgc > 2:248589/1‑96 (MQ=255) ccTGTTGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCggg < 1:94092/100‑1 (MQ=255) ggtggtggTATCGTTTATCGC‑T‑TTTGT‑CAAAAAATTCGACACATTTTCAGGGGATTGGCGCAATGCGTATCATGCTGCTTGGCGCTCCGGGCGCGGGGaa < 2:448471/98‑1 (MQ=255) ttGGTGGTATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGaaa < 1:579892/100‑1 (MQ=255) ggtggtATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAgg < 1:274811/100‑1 (MQ=255) ggtATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAGTGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGAc > 2:1013674/1‑100 (MQ=255) ggtATCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGAc > 2:1489157/1‑100 (MQ=255) aTCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGAAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGAACTCa > 2:518440/1‑100 (MQ=255) tCGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAg < 1:214304/100‑1 (MQ=255) cGTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAgg > 2:586068/1‑100 (MQ=255) gTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGc < 1:1273132/100‑1 (MQ=255) gTTTATCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTATGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGc > 2:1021940/1‑100 (MQ=255) gTTTATCGC‑TGTGG‑T‑CAAAAAATTCGACACATTGGAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAgg > 2:71561/1‑99 (MQ=255) aTCGCTT‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCAg < 1:963689/100‑1 (MQ=255) | TTTCATCATCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCGC‑T‑TTT‑T‑CAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCAG > NC_000913/497035‑497228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |