| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 649,964 | +G | coding (527/909 nt) | citE ← | citrate lyase, citryl‑ACP lyase (beta) subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 649,960 | 1 | . | G | 97.8% | 162.0 / ‑5.0 | 47 | P177P (CCG→CCC) | citE | citrate lyase, citryl‑ACP lyase (beta) subunit |
| Reads supporting (aligned to +/- strand): ref base . (0/1); major base G (23/22); minor base T (1/0); total (24/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTTAGCGTCGGAATAGACGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCC‑GGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAGCGTGAGCGATTTCCACTGCGCG > NC_000913/649864‑650055 | gttAGCGTCGGAATAGACGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCC‑ggg < 1:191402/100‑1 (MQ=255) gCGTCGGAATAGACGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCC‑gggggag > 1:302837/1‑97 (MQ=255) gCGTCGGAATAGACGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCC‑gggggag < 1:1485987/100‑4 (MQ=255) tAGACGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGTGTTCTGTa < 2:694264/100‑1 (MQ=255) tAGACGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTa < 1:1041825/100‑1 (MQ=255) tAGACGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTa < 1:1581193/100‑1 (MQ=255) tAGACGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGGTCAGTTCCTTCCGGGGGAGCGTTCTGTa < 1:630022/100‑1 (MQ=255) gACGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACg > 1:641235/1‑100 (MQ=255) gACGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACg > 1:855890/1‑100 (MQ=255) gACGGTATCGAACGCCTGAATACCCGAAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACg > 1:961098/1‑100 (MQ=255) aCGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGc > 1:834862/1‑100 (MQ=255) cGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCa > 1:193049/1‑100 (MQ=255) ttATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAgg < 1:1154052/99‑1 (MQ=255) tATCGAACGCCTGAATACCCGCAGCGCGCGCGGCCTGCAAAATGGAACAGCGTTCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAgga > 2:1154047/1‑99 (MQ=255) aTCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGtt > 2:363180/1‑100 (MQ=255) cGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTgc > 2:297722/1‑100 (MQ=255) cGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTgc > 1:1533432/1‑100 (MQ=255) cGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTgc > 2:518102/1‑100 (MQ=255) aCGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGca < 2:746824/100‑1 (MQ=255) aCGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGca < 1:45607/100‑1 (MQ=255) cGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGcac < 1:1533618/100‑1 (MQ=255) cGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGcac < 1:386610/100‑1 (MQ=255) cTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATa > 1:1185052/1‑100 (MQ=255) cTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATa < 1:1232173/100‑1 (MQ=255) aTACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGtct < 2:672185/100‑1 (MQ=255) cccGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTCCGAACAGCACTTCAGTTCCTTCCTGCGCCGCGTTCTGTACGCAGGTTGCACACATAGtcttct > 1:1245321/1‑100 (MQ=255) cGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTgn < 2:993852/100‑2 (MQ=255) gcgGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCg < 1:1465669/100‑1 (MQ=255) ctgCCTGGAAAATTGAGCAGCGTGCGAACAGCAGTTCAGTTCCTTCC‑GGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGc < 1:683602/95‑1 (MQ=255) atctcTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGa < 1:892130/96‑1 (MQ=255) ntGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGaagat > 2:892125/2‑96 (MQ=255) cTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATAcc < 1:429608/100‑1 (MQ=255) cTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATAcc < 2:84988/100‑1 (MQ=255) tGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCg > 1:809026/1‑100 (MQ=255) tGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTGCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCg < 2:593163/100‑1 (MQ=255) gCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGa > 1:500019/1‑100 (MQ=255) cAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGAt > 1:577398/1‑100 (MQ=255) aaaaTGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATc < 2:1305309/100‑1 (MQ=255) cAGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCg > 1:1223420/1‑100 (MQ=255) aGCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCgg < 2:809021/100‑1 (MQ=255) gCGTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGa > 1:278828/1‑100 (MQ=255) gTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAg > 1:1322665/1‑100 (MQ=255) gTGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAg > 1:807916/1‑100 (MQ=255) tGCGAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAGc < 1:423873/100‑1 (MQ=255) gAACAGCAGTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCTAGGGCGATACCGATCAAACGCTCGGAAGCGTg > 1:294135/1‑100 (MQ=255) agcagTTCAGTTCCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAGCGTGAGCg < 2:502118/100‑1 (MQ=255) gatcagttcCTTCAGGGGGAGCGTTCTGTACACAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAGCGTGAGCGAttt > 1:1065270/3‑100 (MQ=255) tcagttcCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACACAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAGCGTGAGCGATTTcc < 2:855885/100‑1 (MQ=255) cagttcCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAGCGTGAGCGATTTCCa > 1:619894/1‑100 (MQ=255) cagttcCTTCCGGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAGCGTGAGCGATTTCCa > 2:1087103/1‑100 (MQ=255) ttccttccgGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAGCGTGAGCGATTTCCACTg < 1:251548/100‑1 (MQ=255) cttccgGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAGCGTGAGCGATTTCCACTgcgc < 1:93430/100‑1 (MQ=255) cttccgGGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAGCGTGAGCGATTTCCACTgcgc > 2:855058/1‑100 (MQ=255) cttcc‑GGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAGCGTGAGCGATTTCCACTGcgcg > 1:1403262/1‑100 (MQ=255) | GTTAGCGTCGGAATAGACGGTATCGAACGCCTGAATACCCGCAGAGCGCGCGGCCTGCAAAATGGAACAGCGTGCGAACAGCAGTTCAGTTCCTTCC‑GGGGAGCGTTCTGTACGCAGGTTGCGCACATAGTCTTCTGCACCGAGGGCGATACCGATCAAACGCTCGGAAGCGTGAGCGATTTCCACTGCGCG > NC_000913/649864‑650055 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |