New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 417162517 (0.260)25 (0.410) 7/186 6.8 61.0% intergenic (+81/‑12) rrlB/rrfB 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon
?NC_000913 = 4213004 NA (NA)intergenic (+58/‑36) rrlE/rrfE 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon
Rejected: Coverage evenness skew score above cutoff.

CTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCT  >  NC_000913/4171542‑4171668
                                                                                   |                                           
cgtagaaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTGCAGCCTGAGACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGcc                              <  2:1532738/94‑1 (MQ=1)
       cGCCGAAGCTGTTTTGGTGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCa                      <  1:229552/100‑1 (MQ=11)
        gCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAg                     <  1:279498/100‑1 (MQ=31)
         ccGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGt                    <  1:265400/100‑1 (MQ=32)
           gAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAg                  >  1:889454/1‑100 (MQ=33)
              gCTGTTTTGGCGGATGAGAGAAGATTTTCAGCATGATACGGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAgcgc               <  2:1109856/100‑1 (MQ=16)
                 gTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggt            >  2:719232/1‑100 (MQ=33)
                 gTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggt            <  2:1400742/100‑1 (MQ=33)
                  ttttGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtg           <  1:1347830/100‑1 (MQ=33)
                   tttGGCGGATGATAGAAGATTGTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtgg          <  1:525153/100‑1 (MQ=16)
                      ggCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTcc       >  1:612528/1‑100 (MQ=33)
                      ggCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTcc       >  1:342437/1‑100 (MQ=33)
                        cGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCa     >  2:584468/1‑100 (MQ=32)
                         ggATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAc    >  2:1180508/1‑100 (MQ=32)
                          gATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAcc   >  2:1072325/1‑100 (MQ=31)
                          gATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAcc   <  1:1252221/100‑1 (MQ=31)
                           aTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCt  <  1:859915/100‑1 (MQ=11)
                                                                                   |                                           
CTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCT  >  NC_000913/4171542‑4171668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.