| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 179,327 | A→T | I31F (ATC→TTC) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 179,327 | 0 | A | T | 95.8% | 240.0 / 0.8 | 71 | I31F (ATC→TTC) | dgt | deoxyguanosine triphosphate triphosphohydrolase |
| Reads supporting (aligned to +/- strand): ref base A (1/2); new base T (32/36); total (33/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
GGACATGGCACAGATTGATTTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGATCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTCCACTGGAGCGCAATGCC > NC_000913/179233‑179419 | ggACATGGCACAGATTGATTTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGttcttc > 2:476147/1‑100 (MQ=255) gACATGGCACAGATTGATTTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCg < 1:1079794/100‑1 (MQ=255) aCATGGCACAGATTGATTTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCga > 2:584363/1‑100 (MQ=255) cATGGCACAGATTGATTTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCgag < 2:709727/100‑1 (MQ=255) tGGCACAGATTGATTTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGagag < 1:1230300/100‑1 (MQ=255) ggCACAGATTGATTTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGc < 1:951044/100‑1 (MQ=255) ggCACAGATTGATTTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGc < 1:1076388/100‑1 (MQ=255) ggCACAGATTGATTTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACAGCAGGGCGGTAAAACCGAACATGAGATCCTGCGGATCTTCGAGAGc > 2:255521/1‑100 (MQ=255) cacaGATTGATTTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGa > 2:559770/1‑100 (MQ=255) cacaGATTGATTTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGa > 2:322219/1‑100 (MQ=255) gattgattTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATcgc < 1:322219/100‑1 (MQ=255) ttgattTCCAAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCgg < 1:358926/100‑1 (MQ=255) gattTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGc < 1:435311/100‑1 (MQ=255) attTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAGCCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCg < 2:1334693/100‑1 (MQ=255) attTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCg < 1:1013188/100‑1 (MQ=255) tttCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGt > 1:15329/1‑100 (MQ=255) tCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTat < 1:1001427/100‑1 (MQ=255) tCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTat > 2:1482833/1‑100 (MQ=255) tCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTat > 2:1169323/1‑100 (MQ=255) cGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTatca < 2:28455/100‑1 (MQ=255) cGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTatca < 2:981407/100‑1 (MQ=255) gAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGATCTTCGAGAGCGATCGCGGGCGTatcat < 1:556021/100‑1 (MQ=255) aaaaaaaaTAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTatcat < 1:781862/99‑1 (MQ=255) aaaaaaaTAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTAtcatca < 1:283029/100‑1 (MQ=255) aaaaTAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAAct > 2:46865/1‑100 (MQ=255) aaaTAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAActc > 1:1426380/1‑100 (MQ=255) aTAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACtctc > 1:1570138/1‑100 (MQ=255) tAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTcc < 1:584365/100‑1 (MQ=255) aaaCTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTcc < 2:1496391/99‑1 (MQ=255) aaaCTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCg < 2:931907/100‑1 (MQ=255) aaCTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCgg < 2:1263163/100‑1 (MQ=255) aaCTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCgg < 1:881820/100‑1 (MQ=255) aCTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGc < 1:1311164/100‑1 (MQ=255) aCTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGc < 1:35686/100‑1 (MQ=255) aTCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATtcg > 1:1179547/1‑100 (MQ=255) tcgtcgTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATtcgt > 2:634396/1‑100 (MQ=255) tcgtcgTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATtcgt > 2:1497770/1‑100 (MQ=255) tcgtcgTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCCTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATtcgt > 1:309951/1‑100 (MQ=255) gtcgtTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATtcgtcg < 2:117991/100‑1 (MQ=255) gtcgtTACCGTTCACCGCAGGGCGTGAAAGCCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATtcgtcg < 2:1298669/100‑1 (MQ=255) cgtTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCgtcgtc > 1:567317/1‑100 (MQ=255) gtTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCt > 1:209725/1‑100 (MQ=255) ttACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTg < 1:1497779/100‑1 (MQ=255) cGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGcaac > 1:1236722/1‑100 (MQ=255) gTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGcaaca > 1:840462/1‑100 (MQ=255) cACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACaaaa < 2:15329/100‑1 (MQ=255) aCCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGTCGTATCGTCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAg > 1:314333/1‑100 (MQ=255) gaaGGGCGTTAAAACCGAACATAAGATCCTGCGGTTCTGCGAGAGCGAGCGCGGGCGTATCATCAACGCTCCGGCAATTCGTCGTCGGCAACAAAAGAcc > 2:920546/3‑100 (MQ=255) aGGGCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCa < 1:1313790/100‑1 (MQ=255) ggCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAgg < 1:1482842/100‑1 (MQ=255) gCGTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGt > 2:1551015/1‑100 (MQ=255) gTTAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGttt > 1:804377/1‑100 (MQ=255) tAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACATAAGACCCAAGttttt > 2:819649/1‑100 (MQ=255) tAAAACCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGttttt > 2:902807/1‑100 (MQ=255) aaaaCCGACCATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTCTCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTc < 1:294153/100‑1 (MQ=255) aaaaCCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTc > 2:403400/1‑100 (MQ=255) aaaaCCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTc < 1:1288270/100‑1 (MQ=255) aaaCCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTcc < 1:422501/100‑1 (MQ=255) aaaCCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTcc < 1:295155/100‑1 (MQ=255) aaaCCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTcc > 2:491431/1‑100 (MQ=255) aaaCCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTcc < 2:567316/100‑1 (MQ=255) aCCGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTCCAc < 1:379494/100‑1 (MQ=255) ccGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTCCACt > 2:1369728/1‑100 (MQ=255) cGAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTCCACTg > 1:1343264/1‑100 (MQ=255) cGAACATGAGATCCTGCGGATCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTCCACTg < 1:287640/100‑1 (MQ=255) gAACATGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTCCACTgg < 1:24400/100‑1 (MQ=255) tGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTCCACTGGAgcgc > 2:1402321/1‑100 (MQ=255) tGAGATCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTCTTCCACTGGAgcgc > 2:1079121/1‑100 (MQ=255) agaTCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTCCACTGGAGCGCaa > 1:1481911/1‑100 (MQ=255) gaTCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACACAAGACCCAGGTTTTTCCACTGGAGCGCAAt < 2:667600/100‑1 (MQ=255) gaTCCTGCGGTTCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTCCACTGGAGCGCAAt > 1:1016202/1‑100 (MQ=255) acTGCGGTTGTTCGAGAGAGATCGCGGGCGTATCATCAGCTGTCCGGCGATGAGTAGTCGGCAAAAAACGACAGAGGTGGTGTCACTGGAGCGCAAttac > 2:379912/2‑97 (MQ=255) | GGACATGGCACAGATTGATTTCCGAAAAAAAATAAACTGGCATCGTCGTTACCGTTCACCGCAGGGCGTTAAAACCGAACATGAGATCCTGCGGATCTTCGAGAGCGATCGCGGGCGTATCATCAACTCTCCGGCAATTCGTCGTCTGCAACAAAAGACCCAGGTTTTTCCACTGGAGCGCAATGCC > NC_000913/179233‑179419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |