| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,076 | C→A | pseudogene (287/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,076 | 0 | C | A | 96.5% | 187.6 / ‑3.2 | 57 | pseudogene (287/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base A (26/29); total (26/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACCGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCC > NC_000913/2172980‑2173171 | tGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGcc > 1:976304/1‑100 (MQ=255)tGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGcc < 1:953860/100‑1 (MQ=255) gAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGc > 2:1425722/1‑98 (MQ=255) gAAAATACCGGTCAGATAAATTGCACCAATAATAATGAAACCGGAAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGTGAGAACCGccc < 2:271102/100‑1 (MQ=255) aaagTACCGGTCAGATAAATTTCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACCGCCCt < 1:1196438/100‑1 (MQ=255) aaaaTACCGGTCAGATAAATTGCACCGATAATAATGAGACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCt > 2:845478/1‑100 (MQ=255) aaaaTACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCt < 2:901039/100‑1 (MQ=255) aaaaTACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCt < 1:1313846/100‑1 (MQ=255) aaaaTACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCt > 2:1046722/1‑100 (MQ=255) aaaTACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTg < 2:937286/100‑1 (MQ=255) ncGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCa > 1:934927/2‑100 (MQ=255) ggTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCAtt > 2:824649/1‑100 (MQ=255) gTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTg < 2:579919/100‑1 (MQ=255) gTCAGAGAAATTGCACCGATAATAATGAAACCGTGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACATCCCTGATCCATTg < 2:243408/100‑1 (MQ=255) tCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGa < 1:703066/100‑1 (MQ=255) cAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGaa > 1:896770/1‑100 (MQ=255) aGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAg < 1:447831/100‑1 (MQ=255) aGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAg < 2:1328462/100‑1 (MQ=255) aGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAg < 2:1453546/100‑1 (MQ=255) gATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGc > 2:780723/1‑100 (MQ=255) aTAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGcc < 1:1017504/100‑1 (MQ=255) tAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGcca < 2:117926/100‑1 (MQ=255) aaTTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGccacc < 2:770525/100‑1 (MQ=255) aTTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGccacca > 2:1121898/1‑100 (MQ=255) tGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATa < 2:366617/100‑1 (MQ=255) gCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATAc > 2:1502180/1‑100 (MQ=255) cACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATAcc > 1:1505359/1‑100 (MQ=255) cGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTAATCCATTGAAGCCACCATAccccc > 1:996633/1‑100 (MQ=255) gATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCg < 2:1319876/100‑1 (MQ=255) ataataATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCgg > 2:241026/1‑100 (MQ=255) ataataATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCg > 2:242004/1‑99 (MQ=255) ataatGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCtt > 2:663918/1‑100 (MQ=255) aatGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCtttt < 1:900990/100‑1 (MQ=255) atGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTa < 2:1505350/100‑1 (MQ=255) atGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTa < 2:482178/100‑1 (MQ=255) aaaCCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACg > 2:1248454/1‑100 (MQ=255) aaTATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCa < 1:1567744/100‑1 (MQ=255) ttGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAgcc < 2:390869/100‑1 (MQ=255) tGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAgccg < 1:394631/100‑1 (MQ=255) ggggAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCa > 1:1040631/1‑100 (MQ=255) gggAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAg < 2:133679/100‑1 (MQ=255) aaaaCCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTggg < 1:82657/100‑1 (MQ=255) aCCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAACCGCCAGTTGGgtgt > 1:1554672/1‑100 (MQ=255) ccTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCCGTTGGGtgtg > 2:249295/1‑100 (MQ=255) ccTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGACACCATAGCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGgtg > 2:321809/1‑98 (MQ=255) tGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCa > 1:704579/1‑100 (MQ=255) gAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCaa > 1:381336/1‑100 (MQ=255) cAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACACCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGCGTGCAAACCa > 2:265359/1‑100 (MQ=255) aGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCACACCa > 2:660524/1‑99 (MQ=255) cAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGttt < 1:824654/100‑1 (MQ=255) ggTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTgn < 1:251908/100‑2 (MQ=255) ggTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGc < 2:304495/100‑1 (MQ=255) tAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACTCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGt < 2:1051943/100‑1 (MQ=255) aaTGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTc > 2:287500/1‑100 (MQ=255) tGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTATAACGCCCCAGCATTAGCCGCCAGTCGGGTGTGCAAACCAATAGTTTGCGTcgc > 2:388626/1‑100 (MQ=255) gagaACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGAt < 1:639661/100‑1 (MQ=255) gaACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGAttc < 1:1068033/100‑3 (MQ=255) | TGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACCGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCC > NC_000913/2172980‑2173171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |