| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2837464 | NA (NA) | 14 (0.100) | 9/162 | NT | NA | intergenic (‑39/+114) | hypF/hydN | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
| ? | NC_000913 | = 2837491 | NA (NA) | noncoding (27/27 nt) | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
CCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2837364‑2837464‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctGCCGGATGCGACGCTGTCGTGTCCGGCAGGGCGGGTTACGCAATTCATGATGGCGGGAATAACTCAATGGCAAAAAACACATCTTGCGGTGTCCAACTGCGT < NC_000913/2837491‑2837390 CCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCGTTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCC > 1:1211009/1‑100CCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCC > 2:2369306/1‑100CCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCC < 1:2410999/100‑1CCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCC < 1:41861/100‑1 GACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTG < 2:619694/100‑1 GACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTG < 1:142228/100‑1 GACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTG < 1:1765135/100‑1 GACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTG < 1:2839177/100‑1 CGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCC < 2:696873/100‑1 CGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCC > 2:613318/1‑100 GCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCG < 1:1527320/100‑1 GCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCG < 1:4071490/100‑1 CCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGG > 1:392633/1‑100 CCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGG > 1:932998/1‑100 CCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCTCGCCATCATGAATTGCGTAACCCGCCCTGCCG > 2:1506910/1‑98 CCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGA > 1:3717803/1‑100 CCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCC > 2:1226162/1‑97 TGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGAaa < 1:2816756/100‑3 TACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCC < 2:1139487/100‑1 ACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCCa > 1:1139492/1‑99 ACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCCG < 1:1343118/100‑1 CGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCCGG < 1:2866363/100‑1 AGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCCGGCAG < 1:3061004/100‑1 GTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCCGGCAGG < 1:2962108/100‑1 TTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCCGGCAGGG < 1:1022205/100‑1 TTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCCGGCAGGG < 1:2300063/100‑1 TTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCCGGCAGGG < 1:2496117/100‑1 TTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCCGGCAGGG < 1:459842/100‑1 TTGGACACCGCAAGATGTGTTTGTTGCCAGTGAGTTATTCCCGCCATCATGAATTGCGTAAACCGCCCTGCCGGATGCGACGCTGTCGTGTCCGGCAGGG < 2:622479/100‑1 TGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCCGGCAGGGC < 1:857288/100‑1 CACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCCGGCAGGGCGGGT < 1:2567132/100‑1 CACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTGCCGGATGCGACGCTGTCGTGTCCGGCAGGGCGGGT < 1:488056/100‑1 GCCGGATGCGACGCTGTCGTGTCCGGCAGGGCGGGTTACGCAATTCATGATGGCGGGAATAACTCAATGGCAAAAAACACATCTTGCGGTGTCCAACTGC > 1:714147/1‑100 GCCGGATGCGACGCTGTCGTGTCCGGCAGGGCGGGTTACGCAATTCATGATGGCGGGAATAACTCAATGGCAAAAAACACATCTTGCGGTGTCCAACTGC > 1:2849164/1‑100 CCGGATGCGACGCTGTCGTGTCCGGCAGGGCGGGTTACGCAATTCATGATGGCGGGAATAACTCAATGGCAAAAAACACATCTTGCGGTGTCCAACTGCG > 2:3774690/1‑100 CCGGATGCGACGCTGTCGTGTCCGGCAGGGCGGGTTACGCAATTCATGATGGCGGGAATAACTCAATGGCAAAAAACACATCTTGCGGTGTCCAACTGCG < 1:3674626/100‑1 CCGGATGCGACGCTGTCGTGGCCGGCAGGGCGGGTTACGCAATTCATGATGGCGGGAATAACTCAATGGCAAAAAACACATCTTGCGGTGTCCAACTGCG < 1:2980985/100‑1 CGGATGCGACGCTGTCGTGTCCGGCAGGGCGGGTTACGCAATTCATGATGGCGGGAATAACTCAATGGCAAAAAACACATCTTGCGGTGTCCAACTGCGT > 1:2093630/1‑100 CCGACGCCCTGCACTTTGCCACGAATACGCAGTTGGACACCGCAAGATGTGTTTTTTGCCATTGAGTTATTCCCGCCATCATGAATTGCGTAACCCGCCCTgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2837364‑2837464‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctGCCGGATGCGACGCTGTCGTGTCCGGCAGGGCGGGTTACGCAATTCATGATGGCGGGAATAACTCAATGGCAAAAAACACATCTTGCGGTGTCCAACTGCGT < NC_000913/2837491‑2837390 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |