| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3216603 = | NA (NA) | 8 (0.060) | 6/170 | NT | NA | noncoding (3/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3216630 = | NA (NA) | noncoding (30/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
ATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3216705‑3216603‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGC > NC_000913/3216630‑3216728 ATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTAT < 2:2655120/100‑1ATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTAT > 1:1846403/1‑100ATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTAT < 1:2892153/100‑1ATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTAT > 2:2013908/1‑100 TTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATC > 1:233038/1‑100 TTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATC < 1:2957537/100‑1 TTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATC > 1:3082885/1‑100 TTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATC < 2:352849/100‑1 TTTAAACGTGGACTCATCTCACACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAG > 2:2596733/1‑100 TTTAAACGTGGACTCATCTCACACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAG < 2:2120991/100‑1 TTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATG > 2:1134760/1‑100 ATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCAC > 1:976039/1‑100 ATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCAC > 2:386890/1‑100 TGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACG > 1:426597/1‑100 TGCCTGAGAAGAGGCGGTTCGTCTTATCAGGCATCATTACTCAACGCCGGATGCGGCGTGAGCGCCTTATCCGCCCTACGTGTTATATGAGTCaa > 1:1702932/1‑93 TGCCTGAGAAGAGGCGGTTCGTCTTATCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTT > 2:827057/1‑100 CTGAGAAGAGGCGGTTCGTCTTATCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAA > 2:4095041/1‑100 TGAGAAGAGGCGGTTCGTCTTATCAGGCATCATTACTCAACGCCGGAGGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAA > 2:901681/1‑100 TCAGGCAGCAGTACTCAAAGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAACCATTTTTACACGTGCAAG < 2:3609312/98‑1 CAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAAC > 2:2061594/1‑100 CAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAAC < 2:114084/100‑1 CAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAAC < 1:1241992/100‑1 GGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGC > 2:2996520/1‑100 GGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGC > 1:1660308/1‑100 GGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGC > 1:1332684/1‑100 GGCATCATTACTCAACGCCGGATGCGGCGTGAACGACTTATCCTGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCCAGATCGC > 2:3651591/1‑100 ATTTTTAAACGTGGACTCATCTCACACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3216705‑3216603‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGC > NC_000913/3216630‑3216728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |