| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3216644 | NA (NA) | 8 (0.060) | 5/164 | NT | NA | noncoding (44/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3216674 | NA (NA) | noncoding (74/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3216546‑3216644‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTTGCA < NC_000913/3216674‑3216569 TAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACG > 2:1033107/1‑100 AATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGC > 1:3384251/1‑100 ATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCACCTCTTCTCAGGCATCATTACTCAACGCC > 2:937855/1‑100 ATGATTGTTAATCATGATAAATGCAAGCGATTCGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCC < 2:3050702/100‑1 TGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCG < 1:1060601/100‑1 TGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTATATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCC > 2:2845922/1‑99 GATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCCCAGGCATCATTACTCAACGCC > 1:2156065/1‑98 ATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGCCGAAGTGCCTCTTCTCAGGCATCATTACTCAACGCCGGA < 2:1581022/100‑1 TTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGAT > 1:1938293/1‑100 TTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGAT > 1:440871/1‑100 AAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCC < 1:1030253/100‑1 CGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:4050297/100‑1 GATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCG < 2:1281056/100‑1 ATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCGT < 1:1468983/100‑1 ATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCGT < 1:193047/100‑1 ATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCGT < 2:4078273/100‑1 ATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCGT < 1:406918/100‑1 TTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTG < 1:1489137/100‑1 ACGCCGGATGCGGCGTGAACGCCTTATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAA > 1:1309494/1‑99 CGCCGGATGCGGCGTGAACGCCTTATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATC > 2:926408/1‑100 GCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCG > 1:253861/1‑100 GCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGAGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCG > 1:1363443/1‑100 CCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGGCTATAGACATATCAGTTCTACAAATCGC > 2:3116537/1‑100 CCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGC < 1:2586077/100‑1 CCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGC > 1:2228553/1‑100 CCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGC < 1:2013918/100‑1 CGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGAAATGACGCCTGAGAAGAGGCGGTTCGTCTCATCAGATTATAGACATATCAGTTCTACAAATC < 1:3529847/97‑1 CGGATAAGGCGTTCACGCCGCATCCAGCGTTGAGTAATGATGCCTGCGAAGAAGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATC > 2:2642581/1‑97 GGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTT < 1:2872553/100‑1 GATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTTG < 1:1956369/100‑1 TAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTTGCA < 1:1131045/100‑1 TAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTTGCA > 1:1530545/1‑100 TAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3216546‑3216644‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTTGCA < NC_000913/3216674‑3216569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |