New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 16583	NA (NA)	16 (0.110)	8/168	NT	NA	noncoding (1197/1345 nt)	IS186	repeat region
	?	NC_000913	= 16604	NA (NA)					noncoding (1218/1345 nt)	IS186	repeat region

GCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/16480‑16583 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatggCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGGC  <  NC_000913/16604‑16506                                                                                                                                                                                                               GCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAA                                                                                                           >  1:298783/1‑100  CATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAA                                                                                                          <  2:1582552/100‑1  CATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAA                                                                                                          >  1:4055037/1‑100  CATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAA                                                                                                          <  1:2875199/100‑1   ATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAAT                                                                                                         <  2:810201/100‑1   ATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAAT                                                                                                         <  2:1303388/100‑1   ATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAAT                                                                                                         >  2:3125457/1‑100   ATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAA                                                                                                          <  1:187620/99‑1   ATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAA                                                                                                          <  2:265330/99‑1    TTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAATAACTAACTCGTTGTGGAGAATAACAAAAATG                                                                                                        <  1:2204702/100‑1    TTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATG                                                                                                        <  1:2249279/100‑1     TTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGG                                                                                                       <  1:1814181/100‑1     TTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGG                                                                                                       >  2:210730/1‑100     TTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGG                                                                                                       <  1:875077/100‑1     TTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGG                                                                                                       >  1:577543/1‑100     TTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGG                                                                                                       >  2:3210890/1‑100     TTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGG                                                                                                       <  1:2201321/100‑1     TTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGG                                                                                                       >  1:2735289/1‑100     TTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGG                                                                                                       <  1:2626198/100‑1     TTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATG                                                                                                        <  1:3842580/99‑1     TTTTAATTGACGACATAATCCAGCCATCGCTGGATGTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGG                                                                                                       <  1:2223919/100‑1       TTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAAAGG                                                                                                       >  2:2588724/1‑98       TTAATTGACGACAGAAGCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTAAAAAAAAACAAAAATGG                                                                                                       <  2:3015090/98‑1          ATTGACGACATAATCCAGCCATCGCTGGATTACCCCCCCAGAAGTGCCGGATACGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACC                                                                                                  <  2:205335/100‑1                                  CTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTT                                                                          <  1:2920425/100‑1                                  CTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTT                                                                          <  1:3998691/100‑1                                   TGGATTTCCCCCCCAGAAGTGCCGGATACGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTTG                                                                         <  2:514894/100‑1                                    GGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGT                                                                        <  1:2720080/100‑1                                    GGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGT                                                                        <  2:111339/100‑1                                    GGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGT                                                                        <  1:2037671/100‑1                                     GATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTT                                                                       <  1:3920474/100‑1                                     GATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTT                                                                       <  1:3228181/100‑1                                     GATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTT                                                                       <  1:75093/100‑1                                      ATTTCCCCCCCAGAAGTGCCGGTTCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCCCCTGTAAGCTCCAGATGACCATTTTTGT                                                                        <  1:2678732/98‑1                                       TTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTAT                                                                     <  1:738958/100‑1                                       TTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTAT                                                                     <  1:2055777/100‑1                                         TCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTC                                                                   <  1:328466/100‑1                                           CCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTAT                                                                     <  2:4075595/96‑1                                               CCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCATATTGGAGAATAACAAAAATGGCCACCTGTAAGCGCCAGATGACCATTTTTGTTA                                                                      <  2:2723138/91‑1                                                                          ACTAACTCGTTGTGGAGAATAACAAAAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGCGTTAGTTCTTCTTTTCTGAT                                     >  2:4167423/1‑97                                                                                                  ctAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGC        <  2:2899369/98‑1                                                                                                    AATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTCTTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GCACTCCAGC        >  2:2123280/1‑98                                                                                                      TGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATG    <  2:211223/100‑1                                                                                                      TGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATG    <  2:3144945/100‑1                                                                                                      TGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATG    <  2:893835/100‑1                                                                                                       GGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCTGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGG   <  1:3191686/100‑1                                                                                                       GGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGG‑GAAATCCAGCGATG    <  1:2984059/100‑1                                                                                                       GGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GCAATCCAGCGA      >  1:1886747/1‑97                                                                                                       GGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGG   >  2:1986402/1‑100                                                                                                       GGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGG   >  2:3572157/1‑100                                                                                                       GGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGG   <  1:3049413/100‑1                                                                                                       GGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCGCCAGATCGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGGTGAAATCCAGCGATn    <  2:380026/100‑2                                                                                                        GCCTCCTGTAAGCTCCATATGACCATTTTTGTTGTTCTCCACAGCGAGTTAGTTCTTTTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGGC  <  2:1737338/100‑1                                                                                                        GCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTCGATCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAACTCCAGC        >  2:2820227/1‑94                                                                                                        GCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGTGGG‑GAAATCCATCGATGGC  >  2:1953273/1‑100                                                                                                        GCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGGC  >  1:3230147/1‑100                                                                                                        GCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGGC  >  1:3451225/1‑100                                                                                                        GCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGGC  >  1:3558924/1‑100                                                                                                        GCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGGC  <  1:537040/100‑1                                                                                                        GCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGGC  >  1:2519202/1‑100                                                                                                        GCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGGC  <  2:1002016/100‑1                                                                                                        GCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGGC  >  1:1782811/1‑100                                                                                                        GCCACCTGTAAGCTCCAGATGACCATTTTTGTTAGTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGGC  <  1:1845577/100‑1                                                                                                                                                                                                               GCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/16480‑16583 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatggCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCT‑GGGGGG‑GAAATCCAGCGATGGC  <  NC_000913/16604‑16506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.