New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1040546	NA (NA)	9 (0.070)	4/158	NT	NA	noncoding (4/36 nt)	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 1040578	NA (NA)					noncoding (36/36 nt)	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences

TGGTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGgcctgatgcg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1040448‑1040546 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAAAATGC  <  NC_000913/1040578‑1040470                                                                                                                                                                                                                  TGGTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGG                                                                                                              >  1:666514/1‑100  GGTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGC                                                                                                             >  1:958622/1‑100   GTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC                                                                                                            <  1:141440/100‑1   GTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC                                                                                                            <  1:2074478/100‑1   GTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC                                                                                                            <  2:1727101/100‑1   GTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC                                                                                                            >  1:2573380/1‑100   GTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCAGCGTCTGAAAAGTTAACGAACGTAGGCC                                                                                                            >  2:2504190/1‑100    TATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTGGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCT                                                                                                           >  2:2213791/1‑100     ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTG                                                                                                          >  2:3719042/1‑100     ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTG                                                                                                          >  2:3116215/1‑100      TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCGCCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC                                                                                                            <  2:777813/97‑1       TTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGAT                                                                                                        >  1:2468697/1‑100       TTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGAT                                                                                                        <  1:3297493/100‑1        TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATG                                                                                                       >  2:1769352/1‑100         ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGC                                                                                                      >  2:951092/1‑100         ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGC                                                                                                      >  2:4127461/1‑100          CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCG                                                                                                     >  1:3389026/1‑100                              GTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGATGCTAATGCGCCGCATCAG                                                                                 <  1:4153534/100‑1                               TTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGATGCTAATGCGCCGCATCAGG                                                                                <  1:936906/100‑1                               TTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGATGCTAATGCGCCGCATCAGG                                                                                <  2:1428748/100‑1                               TTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGATGCTAATGCGCCGCATCAGG                                                                                <  2:2749884/100‑1                               TTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGATGCTAATGCGCCGCATCAGG                                                                                <  1:3954288/100‑1                               TTGAGGTGTTCGCTCTCCACCCTTTTGTTTGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGATGCTAATGCGCCGCATCAGG                                                                                <  2:2750735/100‑1                                TGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGATGCTAATGCGCCGCATCAGGC                                                                               <  1:2741675/100‑1                                TGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGATGCTAATGCGCCGCATCAGGC                                                                               <  1:987248/100‑1                                 GATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGATGCTAATGCGCCGCATCAGGCC                                                                              <  1:429653/100‑1                                                                                                    GCCTGATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCA           >  2:1974271/1‑100                                                                                                    GCCTGATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCA           <  1:1796717/100‑1                                                                                                     CCTGATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGTCATACCAACACAAGGGTGGAGAGCGAACACATCAA          >  1:3481659/1‑100                                                                                                     CCTGATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAA          >  1:2760717/1‑100                                                                                                     CCTGATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAA          <  2:2597443/100‑1                                                                                                      CTGATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAAC         >  1:2032104/1‑100                                                                                                       TGATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACA        <  2:3738226/100‑1                                                                                                        GATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAA       >  1:2436846/1‑100                                                                                                         ATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAAA      >  1:210135/1‑100                                                                                                         ATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAAA      >  1:1682992/1‑100                                                                                                         ATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAAA      >  2:3664448/1‑100                                                                                                         ATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGAGGAGAGCGAACACATCAACAga      >  1:559031/1‑98                                                                                                          TGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAAAA     <  1:366263/100‑1                                                                                                          TGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAAAA     >  1:2496489/1‑100                                                                                                          TGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAAAA     <  1:2239877/100‑1                                                                                                          TGCGATGCTAATGCGCCGCATCAGGCCCACGTTCGTTAACTGTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAA          <  2:3429800/95‑1                                                                                                           GCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAAAAT    <  1:721886/100‑1                                                                                                           GCGATGCTAATGCGCCGCATCAGGCCTACGTCCGTTAACTTTACAGACGCGGGTCCAGCCACACCATCACAAGGGTGGAGAGCGAACACATCAACAAAA     <  1:3962526/99‑1                                                                                                            CGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAAAATG   <  1:2974469/100‑1                                                                                                            CGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAAAATG   >  1:1519741/1‑100                                                                                                             GATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAAAATGC  <  2:2280957/100‑1                                                                                                                                                                                                                  TGGTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGgcctgatgcg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1040448‑1040546 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGATGCTAATGCGCCGCATCAGGCCTACGTTCGTTAACTTTTCAGACGCGGGTCCAGCCATACCAACACAAGGGTGGAGAGCGAACACATCAACAAAATGC  <  NC_000913/1040578‑1040470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.