| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1247020 = | 103 (0.690) | 18 (0.130) | 9/160 | NT | 16.8% | coding (357/1698 nt) | treA | periplasmic trehalase |
| ? | NC_000913 | 1247061 = | 86 (0.640) | coding (316/1698 nt) | treA | periplasmic trehalase | |||||
AACCAGAGCGGATTTGATCTGCGCCATTTCGTTAACGTCAATTTCACCCTGCCGAAAGAAGGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1247127‑1247020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacatattTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCAGCAAGGATCATCA > NC_000913/1247061‑1247159 AACCAGAGCGGATTTGATCTGCGCCATTTCGTTAACGTCAATTTCACCCTGCCGAAAGAAGGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCG < 2:3829147/100‑1AACCAGAGCGGATTTGATCTGCGCCATTTCGTTAACGTCAATTTCACCCTGCCGAAAGAAGGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCG < 2:1976435/100‑1 CCAGAGCGGATTTGATCTGCGCCATTTCGTTAACGTCAATTTCACCCTGCCGAAAGAAGGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAA > 1:124319/1‑100 AGAGCGGATTTGATCTGCGCCATTTCGTTAACGTCAATTTCACCCTGCCGAAAGAAGGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACA < 1:2676066/100‑1 AGAGCGGATTTGATCTGCGCCATTTCGTTAACGTCAATTTCACCCTGCCGAAAGAAGGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACA > 2:1926067/1‑100 GAGCGGATTTGATCTGCGCCATTTCGTTAACGTCAATTTCACCCTGCCGAAAGAAGGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACAT > 1:2008750/1‑100 tGCGGATTTGATCTGCGCCATTTCGTTAACGTCAATTTCACCCTGCCGAAAGAAGGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATA < 2:1304412/99‑1 AGCGGATTTGATCTGCGCCATTTCGTTAACGTCAATTTCACCCTGCCGAAAGAAGGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATA < 1:752073/100‑1 GCGGATTTGATCTGCGCCATTTCGTTAACGTCAATTTCACCCTGCCGAAAGAAGGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATAa > 1:1304419/1‑99 GCGGATTTGATCTGCGCCATTTCGTTAACGTCAATTTCACCCTGCCGAAAGAAGGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATAT < 2:1404093/100‑1 GGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATC > 1:544197/1‑100 GGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATC > 1:3337545/1‑100 GCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCA > 2:3239941/1‑100 GCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCA > 1:489202/1‑100 GCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCA > 1:2401691/1‑100 GCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCA > 1:2401601/1‑100 CGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAA > 1:173129/1‑100 GAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAA > 1:1598731/1‑100 GAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAA > 1:636056/1‑100 GAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAA > 1:907981/1‑100 AGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAAT > 1:558678/1‑100 AGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAAT > 1:1457348/1‑100 GAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATC > 2:904331/1‑100 GAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCACCTTCTTTCGGCAGGGCGAAATTGACGTTAACGAAACGGCGCAGATCAAATC > 2:88776/1‑100 ATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTC > 2:4121504/1‑100 TGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCT > 2:182384/1‑100 TGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCT > 2:1824063/1‑100 GAGGGGCAGTCACTGCGCGAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTG < 1:182387/100‑1 GAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCATCA > 2:1799273/1‑98 GAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCAGCAAG < 1:81053/100‑1 GAACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCAGCAAG < 1:582276/100‑1 ACATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCAGCAAGGA < 2:1402459/100‑1 ATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCAGCAAGGATC > 1:982721/1‑100 ATATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCAGCAAGGATC < 1:2592149/100‑1 TATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCAGCAAGGATCA > 1:3389457/1‑100 TATTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCAGCAAGGATCA > 1:3028959/1‑100 TTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCAGCAAGGATCATC > 1:3821645/1‑100 TTTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCAGCAAGGATCATC < 2:3389431/100‑1 TTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCAGCAAGGATCATCA > 1:3162300/1‑100 AACCAGAGCGGATTTGATCTGCGCCATTTCGTTAACGTCAATTTCACCCTGCCGAAAGAAGGCGAGAAATATGTTCCGCCAGAGGGGCAGTCACTGCGCGAACATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1247127‑1247020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacatattTCTCGCCTTCTTTCGGCAGGGTGAAATTGACGTTAACGAAATGGCGCAGATCAAATCCGCTCTGGTTTTGCTGCATCCGATAATCAGCAAGGATCATCA > NC_000913/1247061‑1247159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |