New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 403748123 (0.150)44 (0.310) 12/170 NT 66.7% intergenic (+146/‑38) alaT/rrlA tRNA‑Ala/23S ribosomal RNA of rrnA operon
?NC_000913 = 4037511 NA (NA)intergenic (+176/‑8) alaT/rrlA tRNA‑Ala/23S ribosomal RNA of rrnA operon

GGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCT  >  NC_000913/4037382‑4037580
                                                                                                   |                                                                                                   
ggTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC                                                                                                     >  2:158772‑M1/1‑100 (MQ=255)
ggTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC                                                                                                     >  2:97211‑M1/1‑100 (MQ=255)
ggTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC                                                                                                     <  2:1505537‑M1/100‑1 (MQ=255)
 gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAaca                                                                                                    <  1:296929/100‑1 (MQ=11)
 gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAaca                                                                                                    >  1:488564/1‑100 (MQ=11)
  ttCACTGCGAAGTTTTGCTCTTTAAAAATCTGTATCAAGCTGAAAATTGAACCACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAacac                                                                                                   >  2:847986/1‑100 (MQ=9)
  ttCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAacac                                                                                                   >  1:1487608/1‑100 (MQ=31)
   tCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACg                                                                                                  >  1:2880602/1‑100 (MQ=32)
    cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACga                                                                                                 >  2:2474749/1‑100 (MQ=33)
     aCTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat                                                                                                >  1:3239772/1‑100 (MQ=33)
      cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg                                                                                               >  1:608708/1‑100 (MQ=33)
       tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga                                                                                              <  2:2842200/100‑1 (MQ=32)
       tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga                                                                                              >  1:3907176/1‑100 (MQ=33)
        gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat                                                                                             <  2:3175456/100‑1 (MQ=33)
        gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat                                                                                             <  2:1957211/100‑1 (MQ=32)
        gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat                                                                                             >  1:2270279/1‑100 (MQ=33)
        gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat                                                                                             <  1:1222408/100‑1 (MQ=33)
        gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat                                                                                             >  1:480386/1‑100 (MQ=33)
        gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTAGCAACACgatgat                                                                                             >  2:3846916/1‑100 (MQ=18)
        gCGAAGTTTTGCTCTTTAAAAAGCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat                                                                                             >  2:2420508/1‑100 (MQ=18)
        gCGAAGTGTTTCTCTTTAAAAATGTGTACCTAGCTGAAAAATGAAACACTGAACAGCGAAAGGTTTTCATGAGTCTCGCAAATTCTCGCAACACgattat                                                                                             <  2:4101118/100‑1 (MQ=2)
         ngAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg                                                                                            >  1:39188/2‑100 (MQ=18)
         cGAAGTTTTGCTCTTTAATAATCTGGATCAAGCCGGAAATTGAAACACTGATCAACGAAAGTTGTTCGTGAGTCGCTCAAATTTTCGCAACACGatgatg                                                                                            <  2:1305041/100‑1 (MQ=11)
         cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg                                                                                            <  1:4148214/100‑1 (MQ=33)
         cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg                                                                                            >  1:1314174/1‑100 (MQ=33)
          gAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAtgatga                                                                                           <  2:4061934/100‑1 (MQ=35)
             gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc                                                                                        <  1:2670830/100‑1 (MQ=31)
             gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc                                                                                        <  2:724951/100‑1 (MQ=31)
             gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc                                                                                        <  2:996679/100‑1 (MQ=31)
             gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTAAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc                                                                                        >  2:3111484/1‑100 (MQ=14)
              ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCg                                                                                       <  2:2840061/100‑1 (MQ=11)
              ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCg                                                                                       <  1:3475203/100‑1 (MQ=11)
              ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCg                                                                                       >  1:329689/1‑100 (MQ=11)
                    tctTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgat                                                                                 >  1:1347128‑M1/1‑80 (MQ=255)
                    tctTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttctttcgat                                                                                 >  2:525088‑M1/1‑80 (MQ=255)
                      tttAAAAATCTGGATCAAGCTGAAAATTGAAACACTCAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACacgatgatgtttcgttcgatt                                                                                <  2:1777256‑M1/99‑22 (MQ=255)
                       ttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattca                                                                              >  1:108652‑M1/1‑77 (MQ=255)
                       ttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttacgattca                                                                              <  1:2722889‑M1/100‑24 (MQ=255)
                              tCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgt                                                                       <  2:108650‑M1/100‑31 (MQ=255)
                               cTGGATCAAGCTTAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACacgatgatgtttcttgcgatccatcatcgtg                                                                      <  2:4150788‑M1/100‑32 (MQ=255)
                               cTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttcttgcgatccatcatcgtg                                                                      <  2:3050034‑M1/100‑32 (MQ=255)
                                   aacaaGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttctttcgattcatcatcgtgttgc                                                                  <  1:2212915‑M1/98‑36 (MQ=255)
                                   aTCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttgcgatccatcatcgtgttgc                                                                  <  1:1141425‑M1/100‑36 (MQ=255)
                                   aTCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttgcgatccatcatcgtgttgc                                                                  <  1:3650636‑M1/100‑36 (MQ=255)
                                   aTCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttgcgatccatcatcgtgttgc                                                                  <  1:3788137‑M1/100‑36 (MQ=255)
                                   aTCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgc                                                                  <  1:2269887‑M1/100‑36 (MQ=255)
                                   aTCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgc                                                                  <  2:1510118‑M1/100‑36 (MQ=255)
                                   aTCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgc                                                                  <  1:1449166‑M1/100‑36 (MQ=255)
                                   aTCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgc                                                                  <  1:858694‑M1/100‑36 (MQ=255)
                                   aTCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttacgattcatcatcgtgttgc                                                                  <  1:4164489‑M1/100‑36 (MQ=255)
                                    tCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcg                                                                 <  2:3494742‑M1/100‑37 (MQ=255)
                                    tCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcg                                                                 <  2:3108128‑M1/100‑37 (MQ=255)
                                    tCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttacgattcatcatcgtgttgcg                                                                 <  1:1390362‑M1/100‑37 (MQ=255)
                                    tCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACacgaagatgtttctttcgattcatcatcgtgttgcg                                                                 <  1:992824‑M1/100‑37 (MQ=255)
                                    tCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttctttcgattcatcatcgtgttgcg                                                                 <  1:525092‑M1/100‑37 (MQ=255)
                                    gcaAGCTGAAAATTGAAACACTGGACAACGAAGGTTGTTCGTGTGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgc                                                                  <  2:2468413‑M1/98‑36 (MQ=255)
                                    acaAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttctttcgattcatcatcgtgttgcg                                                                 <  1:3158539‑M1/99‑37 (MQ=255)
                                      aaGCTGAAAATTGAAACACTGAACTACGAGTGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaa                                                               <  2:1084278‑M1/100‑39 (MQ=255)
                                      aaGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttgcgatccatcatcgtgttgcgaa                                                               <  1:1289109‑M1/100‑39 (MQ=255)
                                      aaGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaa                                                               <  2:1119849‑M1/100‑39 (MQ=255)
                                      aaGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttctttcgattcatcatcgtgttgcgaa                                                               <  1:705267‑M1/100‑39 (MQ=255)
                                       aGCTGAAAATTGAAACACTGACCAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaaa                                                              <  1:2252012‑M1/100‑40 (MQ=255)
                                       aGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttctttcgattcatcatcgtgttgcgaaa                                                              <  1:2847293‑M1/100‑40 (MQ=255)
                                       aGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttacgattcatcatcgtgttgcgaaa                                                              <  2:3914666‑M1/100‑40 (MQ=255)
                                        gCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaa                                                             <  1:26538‑M1/100‑41 (MQ=255)
                                        gCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGACTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaa                                                               <  1:1455838‑M1/98‑39 (MQ=255)
                                         cTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaat                                                            <  1:1197423‑M1/100‑42 (MQ=255)
                                         cTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaa                                                             <  2:1347120‑M1/99‑41 (MQ=255)
                                          tGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttcttacgattcatcatcgtgttgcgaaaatt                                                           <  2:2838549‑M1/100‑43 (MQ=255)
                                            aaaaTTGAAACACTGAACAACGAAATTTGTTCGTGCGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttg                                                         <  1:2448163‑M1/100‑45 (MQ=255)
                                            aaaaTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttg                                                         <  1:3538664‑M1/100‑45 (MQ=255)
                                            aaaaTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttg                                                         <  2:72168‑M1/100‑45 (MQ=255)
                                              aaTTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttcttgcgatccatcatcgtgttgcgaaaatttgag                                                       <  2:1503690‑M1/100‑47 (MQ=255)
                                              aaTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgag                                                       <  1:716490‑M1/100‑47 (MQ=255)
                                              aaTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgag                                                       <  1:418957‑M1/100‑47 (MQ=255)
                                              aaTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgag                                                       <  1:636482‑M1/100‑47 (MQ=255)
                                              aaTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgag                                                       <  1:3978936‑M1/100‑47 (MQ=255)
                                                                                                cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     >  1:1884943‑M1/1‑4 (MQ=255)
                                                                                                cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     >  1:130368‑M1/1‑4 (MQ=255)
                                                                                                cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     >  1:1349001‑M1/1‑4 (MQ=255)
                                                                                                cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     <  2:474546‑M1/100‑97 (MQ=255)
                                                                                                cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     >  2:3829851‑M1/1‑4 (MQ=255)
                                                                                                cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     >  1:3554728‑M1/1‑4 (MQ=255)
                                                                                                cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     >  2:2104465‑M1/1‑4 (MQ=255)
                                                                                                cAACccgaagatgattctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     >  1:2802968‑M1/1‑4 (MQ=255)
                                                                                                 aaCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcc    <  2:2282053‑M1/100‑98 (MQ=255)
                                                                                                 aaCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcc    <  1:560968‑M1/100‑98 (MQ=255)
                                                                                                  aCccgaagctgtttctttcgattcatcctcgtgtttcgaaaatttgatagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgaatc    >  2:9691‑M1/1‑2 (MQ=255)
                                                                                                  aCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcca   >  1:826040‑M1/1‑2 (MQ=255)
                                                                                                  aCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcca   >  1:177173‑M1/1‑2 (MQ=255)
                                                                                                  aCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcca   >  1:3743198‑M1/1‑2 (MQ=255)
                                                                                                   cccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag  <  1:1961519‑M1/100‑100 (MQ=255)
                                                                                                   cccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag  >  2:2461307‑M1/1‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCT  >  NC_000913/4037382‑4037580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.