| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 227075 | 7 (0.050) | 24 (0.170) | 10/170 | NT | 78.2% | noncoding (1317/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 227092 | NA (NA) | noncoding (1334/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
GTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTG > NC_000913/226976‑227174 | gtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTG > 1:2393883‑M1/1‑100 (MQ=255) tACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGt < 1:4157192/100‑1 (MQ=35) aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTc > 1:2123969/1‑100 (MQ=33) cTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGAGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc < 2:2559974/100‑1 (MQ=17) gtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaa > 1:2059279/1‑100 (MQ=32) aGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGt < 2:2507737/100‑1 (MQ=32) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACTAAGGGTTCCTGTCCAACGtt > 1:3285097/1‑100 (MQ=17) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGtt < 2:2289891/100‑1 (MQ=32) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGtt > 1:636158/1‑100 (MQ=32) ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGtt < 1:2026939/100‑1 (MQ=32) gTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaa < 1:2435327‑M1/100‑11 (MQ=255) gTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTa > 1:3522754/1‑100 (MQ=31) gTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTa < 1:374639/100‑1 (MQ=31) aGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggaca < 1:3638973‑M1/100‑20 (MQ=255) gTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacagg < 1:4142282‑M1/100‑22 (MQ=255) tATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacagga < 1:4146289‑M1/100‑23 (MQ=255) aTCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCTCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaa < 2:3967731‑M1/100‑24 (MQ=255) tCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaac < 1:3664024‑M1/100‑25 (MQ=255) tCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaac < 2:643470‑M1/100‑25 (MQ=255) tCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaac < 2:1016898‑M1/100‑25 (MQ=255) tCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaac < 2:164348‑M1/100‑25 (MQ=255) tCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaac < 2:1979767‑M1/100‑25 (MQ=255) cAGAAGTGCGAATGCTGACATGAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgagtaacgttggacaggaacc < 2:1586500‑M1/100‑26 (MQ=255) cAGAAGTGCGAATGCTGACATAATGAACGATAACGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaacc < 1:1706516‑M1/100‑26 (MQ=255) cAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaacc < 2:3741524‑M1/100‑26 (MQ=255) cAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaacc < 1:2659246‑M1/100‑26 (MQ=255) cAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaacc < 2:3754368‑M1/100‑26 (MQ=255) cAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaacc < 1:1759510‑M1/100‑26 (MQ=255) cAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaac < 1:1244905‑M1/99‑25 (MQ=255) aGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGGCCAAGGGTTCCTGccccgattaacgttggacaggaac < 2:3647163‑M1/98‑25 (MQ=255) gAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaaccct < 1:1911801‑M1/100‑28 (MQ=255) gAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaac < 2:1929613‑M1/97‑25 (MQ=255) aaGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaaccctt < 2:590874‑M1/100‑29 (MQ=255) aaGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaaccctt < 1:3993227‑M1/100‑29 (MQ=255) aaGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaaccctt < 1:587785‑M1/100‑29 (MQ=255) gTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGccccgattaacgttggacaggaacccttgg < 1:2723150‑M1/100‑31 (MQ=255) cactgccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgata > 1:2828226‑M1/3‑5 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttcctgcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgata < 2:177454‑M1/99‑96 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcccccgctttatcgttacttatgtcagcattcgcacttctgata < 1:1037539‑M1/99‑96 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac > 2:2644222‑M1/1‑4 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac < 1:2589274‑M1/100‑97 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac < 2:2076880‑M1/100‑97 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac > 1:1413063‑M1/1‑4 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac > 1:84693‑M1/1‑4 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac > 2:359862‑M1/1‑4 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac < 2:3487644‑M1/100‑97 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac > 2:4081630‑M1/1‑4 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac < 2:2447624‑M1/100‑97 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac > 2:2449571‑M1/1‑4 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac > 1:1020245‑M1/1‑4 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac > 1:3425509‑M1/1‑4 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgata < 2:1973482‑M1/99‑96 (MQ=255) ccTGccccgattaacgttggacaggaacccttggtcttccgacgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatac > 2:2271474‑M1/1‑4 (MQ=255) ccTGccccgattaacgttggacaggaacccttgctcttccggcgagcgggcttttctcccgctttatcgttacttatgtcagcattcgcacttctgatac < 1:1167858‑M1/100‑97 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc < 2:2040815‑M1/100‑98 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc < 2:3065097‑M1/100‑98 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc > 2:1574756‑M1/1‑3 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc < 1:3667952‑M1/100‑98 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc < 1:2467300‑M1/100‑98 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc > 1:2653183‑M1/1‑3 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc < 1:289476‑M1/100‑98 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc > 1:2244094‑M1/1‑3 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc < 1:2110646‑M1/100‑98 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc < 1:2053122‑M1/100‑98 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc > 2:411628‑M1/1‑3 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc < 1:1605291‑M1/100‑98 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc < 1:1481037‑M1/100‑98 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc > 1:10058‑M1/1‑3 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc < 2:1597838‑M1/100‑98 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgat < 2:2617115‑M1/97‑95 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgat < 2:1793018‑M1/97‑95 (MQ=255) cTGccccgattaacgttggacaggaacccttggtcatccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacc > 2:1840120‑M1/1‑3 (MQ=255) tGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacct < 2:3779396‑M1/100‑99 (MQ=255) tGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacct > 1:3184947‑M1/1‑2 (MQ=255) tGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacct > 1:3020205‑M1/1‑2 (MQ=255) tGccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacct > 2:1636496‑M1/1‑2 (MQ=255) tGccccgattaacgtgggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacct < 2:3494077‑M1/100‑99 (MQ=255) gccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctc < 1:1005133‑M1/100‑100 (MQ=255) gccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctc < 1:1101715‑M1/100‑100 (MQ=255) gccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctc < 2:2242951‑M1/100‑100 (MQ=255) gccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctc > 1:3892253‑M1/1‑1 (MQ=255) gccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctc > 1:1794277‑M1/1‑1 (MQ=255) gccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctc > 1:3071454‑M1/1‑1 (MQ=255) gccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctc > 1:247271‑M1/1‑1 (MQ=255) gccccgattaacgttggacaggaacccttggtcttccggcgagcgggcttttcacccgctttatcgttacttatgtcagcattcacacttctgata < 2:1306099‑M1/96‑96 (MQ=255) | GTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTG > NC_000913/226976‑227174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |