New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3650792NA (NA)10 (0.070) 8/166 NT NA noncoding (81/100 nt) RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3650805 NA (NA)noncoding (94/100 nt) RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 221 total aligned reads displayed.

TTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACA  >  NC_000913/3650708‑3650904
                                                                                                 |                                                                                                   
  aTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCAtcag                                                                                                 >  1:3073119‑M2/1‑96 (MQ=255)
    gTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCAtcaggc                                                                                               >  1:112922‑M2/1‑94 (MQ=255)
    gTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCAtcaggc                                                                                               <  1:687036‑M2/100‑7 (MQ=255)
    gTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCAtcaggc                                                                                               <  1:1665744‑M2/100‑7 (MQ=255)
     tCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCg                                                                                              >  2:2163044/1‑100 (MQ=255)
      cGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCATAGCGCATCAGGCGa                                                                                             >  1:4111387/1‑100 (MQ=255)
       ggATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGAt                                                                                            >  1:1549788/1‑100 (MQ=255)
           gCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTg                                                                                        <  1:3299101/100‑1 (MQ=255)
           gCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTg                                                                                        <  2:2458724/100‑1 (MQ=255)
           gCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAAGTCGAGGAATAGTATGTTATTTGTAGGCCGGACAGGCGTAGCGCATCAGGCGAtttt                                                                                         <  1:3480546/99‑1 (MQ=255)
            cGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGc                                                                                       <  1:1426803/100‑1 (MQ=255)
            cGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGc                                                                                       >  2:3944534/1‑100 (MQ=255)
            cGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGc                                                                                       <  1:2803468/100‑1 (MQ=255)
             gACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCt                                                                                      <  2:3449651/100‑1 (MQ=255)
               cGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTAt                                                                                    >  2:2343945/1‑100 (MQ=255)
                 cTGGCGCGTCTTATCCTACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTAt                                                                                    <  2:1146749/98‑1 (MQ=255)
                 cTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTAttt                                                                                  <  2:2643480/100‑1 (MQ=255)
                   ggCGCGTCTTATCCGTCCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTTGCGCATCAGGCGATTTTGCTATTTac                                                                                <  2:1823289/100‑1 (MQ=255)
                   ggCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTac                                                                                >  2:836999/1‑100 (MQ=255)
                   ggCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTac                                                                                >  1:3220723/1‑100 (MQ=255)
                   ggCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTac                                                                                <  2:3376650/100‑1 (MQ=255)
                   ggCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTac                                                                                <  2:3263032/100‑1 (MQ=255)
                     cgcgTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTacac                                                                              <  2:487015/100‑1 (MQ=255)
                     cgcgTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTacac                                                                              <  1:1399174/100‑1 (MQ=255)
                     cgcgTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTacac                                                                              >  1:2251486/1‑100 (MQ=255)
                        gTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACCGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAg                                                                            <  2:1316682/99‑1 (MQ=255)
                        gTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGt                                                                           <  2:1686915/100‑1 (MQ=255)
                             aTCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTcc                                                                      >  1:805504/1‑100 (MQ=255)
                             aTCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTcc                                                                      >  1:2130453/1‑100 (MQ=255)
                              tCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTccc                                                                     <  1:3836786/100‑1 (MQ=255)
                                cGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTg                                                                   >  1:3563728/1‑100 (MQ=255)
                                  aCCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCg                                                                 <  1:815784/100‑1 (MQ=255)
                                  aCCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCg                                                                 <  1:2696347/100‑1 (MQ=255)
                                   ccTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGt                                                                >  1:891516/1‑100 (MQ=255)
                                     tACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTga                                                              <  1:3643626/100‑1 (MQ=255)
                                     naCAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTga                                                              >  2:229446/2‑100 (MQ=255)
                                      aCAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTgag                                                             <  2:1064286/100‑1 (MQ=255)
                                      aCAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTgag                                                             <  1:2633337/100‑1 (MQ=255)
                                      aCAAAGTTATGAAAATTCGATGAATAGTATATTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTACCTGCGTgag                                                             >  2:2740548/1‑100 (MQ=255)
                                       cAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTgaga                                                            >  2:148718/1‑100 (MQ=255)
                                        aaaGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGAt                                                           >  1:3275257/1‑100 (MQ=255)
                                         aaGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGAtt                                                          <  2:294874/100‑1 (MQ=255)
                                           gTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTcc                                                        <  1:967623/100‑1 (MQ=255)
                                            ttATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCa                                                       >  1:4018881/1‑100 (MQ=255)
                                            ttATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCa                                                       >  1:429049/1‑100 (MQ=255)
                                             tATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCaa                                                      >  1:3963492/1‑100 (MQ=255)
                                             tATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGAGTAGCGCATCAGGCGATTTTGCTATTTCCACAGTACTCTCTGCGTGATATGCCaa                                                      <  2:579501/100‑1 (MQ=38)
                                              aTGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGTCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAAt                                                     <  1:3702582/100‑1 (MQ=255)
                                              aTGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAAt                                                     >  2:4056229/1‑100 (MQ=255)
                                               tGAAAATTCGATGAATAGTATGTTATTTGTAGGTCTAAAACGCGTAGCGCATCGTGCGATTTTGCTATATACACAGTACTCCCTGCGTGAGATTCCAAtt                                                    >  2:750205/1‑100 (MQ=255)
                                               tGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAAtt                                                    <  1:678746/100‑1 (MQ=255)
                                               tGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAAtt                                                    >  1:1226544/1‑100 (MQ=255)
                                                   aaTTCGATGAATAGTATGTTATTTGTAGGCTTGACAGGCGTAGCGCATTAGGCGATTTTGATATTTACACAGTACTCCCTGCGTGAGATTCCAATTATcg                                                <  2:822538/100‑1 (MQ=255)
                                                      tCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGTGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGt                                             <  1:2839238/100‑1 (MQ=255)
                                                       cGATGGATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGt                                             >  2:1012340/1‑99 (MQ=255)
                                                        gATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTcc                                           <  1:1754482/100‑1 (MQ=255)
                                                        gATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTAAACAGTACTCCCTGCATGAGATTCCAATTATCGCGTcc                                           >  2:2810527/1‑100 (MQ=255)
                                                        gATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAACGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTcc                                           >  2:2220945/1‑100 (MQ=255)
                                                         aTGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCa                                          >  2:1581916/1‑100 (MQ=255)
                                                         aTGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCa                                          >  1:2469016/1‑100 (MQ=255)
                                                         aTGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCa                                          >  2:331614/1‑100 (MQ=255)
                                                               aGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATgg                                    >  1:1250926/1‑100 (MQ=255)
                                                               aGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATgg                                    <  1:3364391/100‑1 (MQ=255)
                                                                gTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGgt                                   >  1:3893157/1‑100 (MQ=255)
                                                                 tATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGgtg                                  >  1:1997323/1‑100 (MQ=255)
                                                                  aTGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGgtgt                                 >  2:1241952/1‑100 (MQ=255)
                                                                  aTGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGgtgt                                 >  1:1474873/1‑100 (MQ=255)
                                                                  aTGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGgtgt                                 >  2:269782/1‑100 (MQ=255)
                                                                   tGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTa                                >  2:3107578/1‑100 (MQ=255)
                                                                     ttATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTAtn                              <  1:229448/100‑2 (MQ=255)
                                                                     ttATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATc                              <  2:1563436/100‑1 (MQ=255)
                                                                     ttATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATc                              >  1:1004955/1‑100 (MQ=255)
                                                                     ttATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATc                              <  1:3594132/100‑1 (MQ=255)
                                                                       aTTTGTAGGCCTGACAGGCGTAGCGCAtcaggcctacaaataacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcg                            <  1:1792197‑M2/100‑74 (MQ=255)
                                                                       aTTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTACTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAg                            <  2:1396350/100‑1 (MQ=255)
                                                                        tttGTAGGCCTGACAGGCGTAGCGCAtcaggcctacaaataacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgc                           <  1:1379973‑M2/100‑75 (MQ=255)
                                                                         ttGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTg                          <  1:56489/100‑1 (MQ=255)
                                                                         ttGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGACTCCAATTATCGCGTCCAGCATGGTGTATCAGTg                          <  2:2494094/100‑1 (MQ=255)
                                                                          tGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGa                         >  1:3773416/1‑100 (MQ=255)
                                                                          tGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTAATCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGa                         >  1:2428026/1‑100 (MQ=255)
                                                                           gTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAg                        >  2:2855426/1‑100 (MQ=255)
                                                                             aGGCCTGACAGGCGTAGCGCAtcaggcctacaaataacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgcatccg                      <  2:2378410‑M2/100‑80 (MQ=255)
                                                                              ggCCTGACAGGCGTAGCGCAtcaggcctacaaataacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgcatccga                     <  2:1965678‑M2/100‑81 (MQ=255)
                                                                              ggCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAgctg                     >  2:1415604/1‑100 (MQ=255)
                                                                              ggCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAgctg                     >  1:570131/1‑100 (MQ=255)
                                                                               gCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAgctgc                    >  2:1709831/1‑100 (MQ=255)
                                                                                ccTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGCGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAgctgat                   >  2:2065088/1‑98 (MQ=255)
                                                                                ccTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAgctgct                   >  2:385264/1‑100 (MQ=255)
                                                                                    aCAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGt               <  1:3259245/100‑1 (MQ=255)
                                                                                    aCAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGt               <  1:2964372/100‑1 (MQ=255)
                                                                                     cAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGtt              >  1:660984/1‑100 (MQ=255)
                                                                                     cAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGtt              <  2:4169628/100‑1 (MQ=255)
                                                                                         cGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCa          <  2:1168584/100‑1 (MQ=255)
                                                                                           tAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGc        <  2:1302591/100‑1 (MQ=255)
                                                                                             gcgcATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGa      >  1:490341/1‑100 (MQ=255)
                                                                                              cgcATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGAt     <  1:2832321/100‑1 (MQ=255)
                                                                                               gcATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATa    >  1:3324968/1‑100 (MQ=255)
                                                                                                cATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATAc   <  1:462012/100‑1 (MQ=255)
                                                                                                cATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATAc   <  1:1154504/100‑1 (MQ=255)
                                                                                                 aTCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACa  >  2:358998/1‑100 (MQ=255)
                                                                                                 |                                                                                                   
TTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACA  >  NC_000913/3650708‑3650904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.