New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 213635NA (NA)10 (0.070) 5/164 NT NA noncoding (4/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 213668 NA (NA)noncoding (37/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 223 total aligned reads displayed.

AGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGG  >  NC_000913/213569‑213766
                                                                                                   |                                                                                                  
    ggTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGaaa                                                                                                >  2:2751765/1‑100 (MQ=255)
     gtgtGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAg                                                                                               <  1:3271435/100‑1 (MQ=255)
     gtgtGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAg                                                                                               <  2:2219853/100‑1 (MQ=255)
     gtgtGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAg                                                                                               <  2:3146026/100‑1 (MQ=255)
      tgtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGt                                                                                              >  1:1833699/1‑100 (MQ=255)
       gtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGaagatc                                                                                             >  2:3418438/1‑96 (MQ=255)
       gtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTc                                                                                             <  2:1798310/100‑1 (MQ=255)
       gtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTc                                                                                             <  1:1964373/100‑1 (MQ=255)
       gtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTc                                                                                             <  1:2686115/100‑1 (MQ=255)
        tgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCa                                                                                            <  2:3527737/100‑1 (MQ=255)
         ggCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTc                                                                                             <  1:2378415/98‑1 (MQ=255)
         ggCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCaa                                                                                           >  1:3707174/1‑100 (MQ=255)
         ggCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCaa                                                                                           >  1:150225/1‑100 (MQ=255)
           cTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATc                                                                                         >  2:3445133/1‑100 (MQ=255)
             gAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAg                                                                                       >  2:2259160/1‑100 (MQ=255)
             gAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAg                                                                                       <  1:1742566/100‑1 (MQ=255)
                ggTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGAt                                                                                    <  2:1055897/100‑1 (MQ=255)
                 gTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGAtt                                                                                   >  1:3720451/1‑100 (MQ=255)
                  tGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGAtt                                                                                   >  2:781791/1‑99 (MQ=255)
                    agaATGGCGTAAGTTTTGTCTGGCAGAATACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGc                                                                                <  1:113625/100‑1 (MQ=255)
                     gaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCt                                                                               >  2:1939495/1‑100 (MQ=255)
                       aTGGCGTAAGTTTTGTCGGGAAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTa                                                                             <  2:2647633/100‑1 (MQ=255)
                       aTGGCGTAAGTTTTGTCAGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCtt                                                                              <  2:3273245/99‑1 (MQ=255)
                         ggCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTacc                                                                           <  2:868368/100‑1 (MQ=255)
                          gCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTacca                                                                          <  1:3806671/100‑1 (MQ=255)
                           cGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccac                                                                         >  1:4025638/1‑100 (MQ=255)
                           cGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccac                                                                         >  1:3075538/1‑100 (MQ=255)
                              aaGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccaccac                                                                      <  1:2603531/100‑1 (MQ=255)
                               aGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCCTCCGGCGAAAGGCAATCAGGATTCGCTTaccaccacc                                                                     >  2:3688252/1‑100 (MQ=255)
                                    tGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTAcc                                                                >  2:1522419/1‑100 (MQ=255)
                                       cTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGAt                                                             >  1:2141588/1‑100 (MQ=255)
                                        tGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGAtt                                                            <  2:214659/100‑1 (MQ=255)
                                         ggCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGAttt                                                           >  1:3044244/1‑100 (MQ=255)
                                          gCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTc                                                          >  1:1460295/1‑100 (MQ=255)
                                            aGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCg                                                        <  1:1555244/100‑1 (MQ=255)
                                             gAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCTCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTAACGATATCCg                                                        >  2:2371834/1‑99 (MQ=255)
                                             gAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCgg                                                       >  2:1890206/1‑100 (MQ=255)
                                               aaaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGt                                                     >  1:279857/1‑100 (MQ=255)
                                               aaaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGt                                                     <  1:3648207/100‑1 (MQ=255)
                                               aaaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCAGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGt                                                     >  2:436745/1‑100 (MQ=255)
                                                aaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTg                                                    <  1:3461033/100‑1 (MQ=255)
                                                aaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTg                                                    <  1:1009935/100‑1 (MQ=255)
                                                aaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTg                                                    <  2:3550885/100‑1 (MQ=255)
                                                  cGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGc                                                  <  2:2017852/100‑1 (MQ=255)
                                                   gCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCt                                                 <  1:290155/100‑1 (MQ=255)
                                                    cTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTa                                                <  2:2917556/100‑1 (MQ=255)
                                                      tAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTaaa                                              >  1:3494138/1‑100 (MQ=255)
                                                       aGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAg                                             >  1:130418/1‑100 (MQ=255)
                                                       aGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAg                                             >  1:3153620/1‑100 (MQ=255)
                                                        gTTAAGTGAAAGACGGATAACACGCAACAAACGTAGCCTCCGGCGAAAGTCAATCACGATTCGCTTACCACCACCGTACCGTTTTCCGGGTGGCTaa                                               <  2:3904647/97‑1 (MQ=255)
                                                         ttAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCt                                           <  2:3998677/100‑1 (MQ=255)
                                                          tAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTg                                          >  1:528286/1‑100 (MQ=255)
                                                          tAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTg                                          >  1:1532583/1‑100 (MQ=255)
                                                           aaGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTgg                                         <  2:2480192/100‑1 (MQ=255)
                                                            aGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccac                                        <  2:541635‑M2/100‑61 (MQ=255)
                                                            aGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccac                                        <  1:111275‑M2/100‑61 (MQ=255)
                                                             gTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTa                                       >  2:3259286/1‑100 (MQ=255)
                                                             gTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTa                                       >  1:3203172/1‑100 (MQ=255)
                                                             gTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTa                                       >  1:2256810/1‑100 (MQ=255)
                                                              tGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTaa                                      >  2:4170645/1‑100 (MQ=255)
                                                               gAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTaa                                      >  2:791569/1‑99 (MQ=255)
                                                                aaaGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtt                                    >  1:198048/1‑100 (MQ=255)
                                                                 aaGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAttt                                   <  1:3838791/100‑1 (MQ=255)
                                                                  aGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtttt                                  >  1:3916729/1‑100 (MQ=255)
                                                                  aGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtttt                                  <  2:2434164/100‑1 (MQ=255)
                                                                   gCCGGATAAGACGCATCAAACGTCGCATCCGGCGAACGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTa                                 <  1:2926320/100‑1 (MQ=255)
                                                                   gCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTa                                 <  1:1915784/100‑1 (MQ=255)
                                                                   gCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTa                                 <  2:3187165/100‑1 (MQ=255)
                                                                   gCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTa                                 <  1:1695209/100‑1 (MQ=255)
                                                                    ccGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTAt                                >  1:1373387/1‑100 (MQ=255)
                                                                     cGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATc                               <  1:468323/100‑1 (MQ=255)
                                                                      ggATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATc                               <  1:3617367/99‑1 (MQ=255)
                                                                       gATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCa                             <  2:3735031/100‑1 (MQ=255)
                                                                        aTAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAg                            <  2:623678/100‑1 (MQ=255)
                                                                          aaGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGAc                          <  1:338290/100‑1 (MQ=255)
                                                                           aGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACg                         >  1:673361/1‑100 (MQ=255)
                                                                            gACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGc                        >  1:652910/1‑100 (MQ=255)
                                                                               gCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGc                     <  2:1260072/100‑1 (MQ=255)
                                                                                cATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCt                    >  1:909358/1‑100 (MQ=255)
                                                                                cATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGAATGGCTAAAGCTGGTAATTTTATCCAGACGCAGCt                    >  1:1386372/1‑100 (MQ=255)
                                                                                  tCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACTCAGCTcg                  >  1:1650180/1‑100 (MQ=255)
                                                                                   cAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTcgc                 >  2:683588/1‑100 (MQ=255)
                                                                                    aaaGGTCGCGCCCGGCGAAACTAACGGAGGAATCGCTTACCACCACCGTACCGATTAGCTCGTGGATAAAGCCGGTAATTTTATCCAGACGAAGc                     <  2:3819797/95‑1 (MQ=255)
                                                                                     aaCGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCgg               >  1:2952993/1‑100 (MQ=255)
                                                                                      aCGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCggg              <  1:3360606/100‑1 (MQ=255)
                                                                                       cGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGt             <  2:2589091/100‑1 (MQ=255)
                                                                                          cGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTc          <  1:1257887/100‑1 (MQ=255)
                                                                                           gCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCg         >  1:1185280/1‑100 (MQ=255)
                                                                                           gCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCg         >  1:749685/1‑100 (MQ=255)
                                                                                           gCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCg         >  2:2995709/1‑100 (MQ=255)
                                                                                            cATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGc        >  2:3632757/1‑100 (MQ=255)
                                                                                            cATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGc        <  1:2660645/100‑1 (MQ=255)
                                                                                            cATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGc        >  1:957605/1‑100 (MQ=255)
                                                                                             aTCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccacaccttcttgcgtcacaaatacccctgccgccgc       <  2:146280‑M2/100‑94 (MQ=255)
                                                                                             aTCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccacaccttcttgcgtcacaaatacccctgccgccgc       >  1:1024500‑M2/1‑7 (MQ=255)
                                                                                             aTCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGAGGGCTTCGcc       >  1:2935058/1‑100 (MQ=255)
                                                                                              tCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccacaccttcttgcgtcacaaatacccctgccgccgca      <  2:3035756‑M2/100‑95 (MQ=255)
                                                                                                  gCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCgg  <  2:1835858/100‑1 (MQ=255)
                                                                                                  gCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCgg  <  1:4093586/100‑1 (MQ=255)
                                                                                                  gCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCgg  <  2:1294724/100‑1 (MQ=255)
                                                                                                   |                                                                                                  
AGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGG  >  NC_000913/213569‑213766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.