BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	837541 =	NA (NA)	6 (0.040)	4/166	NT	NA	noncoding (3/123 nt)	REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences
*	?	NC_000913	837571 =	NA (NA)	6 (0.040)	4/166	NT	NA	noncoding (33/123 nt)	REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences

Only 100 of 172 total aligned reads displayed.

GTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACT  >  NC_000913/837473‑837669

ccgcatccggcaacagatgcctgatgcgacgctaccgcgtcttatcaggcctacaaaatccgaaccgtTGGACGTAGCGTAAACGCCTGATCCGTCCAAc                                                                                                   >  1:1081202‑M1/69‑100 (MQ=255)

 tAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACg                                                                                                  <  1:2849417/100‑1 (MQ=255)

  gcatccggcaacagatgcctgatgcgacgctaccgcgtcttatcaggcctacaaaatccgaaccgtTGGACGTAGCGTAAACGCCTGATCCGTCCAACgg                                                                                                 >  1:2397308‑M1/67‑100 (MQ=255)

  gcatccggcaacagatgcctgatgcgacgctaccgcgtcttatcaggcctacaaaatccgaaccgtTGGACGTAGCGTAAACGCCTGATCCGTCCAACgg                                                                                                 >  1:415929‑M1/67‑100 (MQ=255)

    cATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGtt                                                                                               >  1:1805987/1‑100 (MQ=255)

    atccggcaacagatgcctgatgcgacgctaccgcgtcttatcaggcctacaaaatccgaaccgtTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGt                                                                                                >  1:413448‑M1/65‑99 (MQ=255)

      tAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCg                                                                                             <  2:2823367/100‑1 (MQ=255)

      tAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCg                                                                                             <  1:1763797/100‑1 (MQ=255)

         gATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATTCTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGAt                                                                                          <  1:3920848/100‑1 (MQ=255)

         gATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGAt                                                                                          >  1:4142158/1‑100 (MQ=255)

          aTCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGAtt                                                                                         >  1:3773269/1‑100 (MQ=255)

           tCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGAttt                                                                                        >  1:829686/1‑100 (MQ=255)

             aaTGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTg                                                                                      <  2:2961722/100‑1 (MQ=255)

              aTGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGt                                                                                     >  1:1127969/1‑100 (MQ=255)

              aTGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGt                                                                                     >  2:1181268/1‑100 (MQ=255)

               tGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTa                                                                                    >  2:643629/1‑100 (MQ=255)

                gAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAg                                                                                   >  1:3253773/1‑100 (MQ=255)

                 aGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAgg                                                                                  <  2:2384035/100‑1 (MQ=255)

                  gggTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGc                                                                                 <  1:4081976/100‑1 (MQ=255)

                   ggTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGcc                                                                                <  1:1745650/100‑1 (MQ=255)

                    gTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCt                                                                               <  1:173601/100‑1 (MQ=255)

                    gTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCt                                                                               >  1:1346580/1‑100 (MQ=255)

                     ttAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTg                                                                              >  2:2873623/1‑100 (MQ=255)

                       agagCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGAt                                                                            >  2:1887092/1‑100 (MQ=255)

                        gagCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATa                                                                           <  1:972875/100‑1 (MQ=255)

                          gCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAg                                                                         >  2:2158098/1‑100 (MQ=255)

                          gCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAg                                                                         >  2:2342008/1‑100 (MQ=255)

                          gCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAg                                                                         >  1:1013765/1‑100 (MQ=255)

                              atGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGAcgc                                                                     >  2:914822/1‑100 (MQ=255)

                              atGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGAcgc                                                                     <  2:3212026/100‑1 (MQ=255)

                              atGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGAcgc                                                                     >  2:725045/1‑100 (MQ=255)

                               tGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGAcgcg                                                                    >  2:347283/1‑100 (MQ=255)

                                gCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCgg                                                                   >  2:1709292/1‑100 (MQ=255)

                                 cGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTTGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGt                                                                  <  2:3974600/100‑1 (MQ=255)

                                 cGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGt                                                                  >  1:746864/1‑100 (MQ=255)

                                 cGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGt                                                                  <  1:1143400/100‑1 (MQ=255)

                                 cGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGt                                                                  >  2:1976030/1‑100 (MQ=255)

                                 cGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGt                                                                  >  2:1675659/1‑100 (MQ=255)

                                 cGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCATGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGt                                                                  <  1:4020911/100‑1 (MQ=255)

                                     tGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAAGGGTTCAGATTTTGTGGGCCTGATAAGACGCGGTAGCg                                                              >  2:2815305/1‑100 (MQ=255)

                                      gTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGt                                                             >  2:2281181/1‑100 (MQ=255)

                                      gTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGt                                                             >  1:1616594/1‑100 (MQ=255)

                                      gTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGt                                                             >  2:2515424/1‑100 (MQ=255)

                                      gTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGAGTTTGTAGGCCTGATAAGACGCGGTAGCGt                                                             >  2:2887347/1‑100 (MQ=255)

                                        cGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCg                                                           >  2:895103/1‑100 (MQ=255)

                                         ggCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGc                                                          <  1:2483799/100‑1 (MQ=255)

                                           cAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCAt                                                        >  2:1750808/1‑100 (MQ=255)

                                              acagacagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAg                                                     <  1:116689/100‑1 (MQ=255)

                                               cagacagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAgg                                                    <  1:2278978/100‑1 (MQ=255)

                                               cagacagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAgg                                                    <  2:796243/100‑1 (MQ=255)

                                                 gacagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTATGCCTGATAAGACGCGGTAGCGTCGCATCAGGc                                                   >  2:4106558/1‑99 (MQ=255)

                                                 gacagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCa                                                  >  2:1456527/1‑100 (MQ=255)

                                                  acagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAggaga                                                 >  1:3174700/1‑97 (MQ=255)

                                                   cagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCAt                                                 >  2:3874739/1‑99 (MQ=255)

                                                   cagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATc                                                <  2:3612554/100‑1 (MQ=255)

                                                   cagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATc                                                <  1:347286/100‑1 (MQ=255)

                                                   cagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATc                                                >  2:1637429/1‑100 (MQ=255)

                                                   cagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATc                                                >  1:613456/1‑100 (MQ=255)

                                                   cagGGAAATACTTGGGCTGAACGTAGCGTAAACGCCTTATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATc                                                <  1:2559838/100‑1 (MQ=255)

                                                     gggAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTg                                              >  2:784260/1‑100 (MQ=255)

                                                     gggAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTg                                              >  2:2421072/1‑100 (MQ=255)

                                                     gggAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTg                                              >  1:2130172/1‑100 (MQ=255)

                                                       gAAATACTTGTGCCGGCCGTAGCGTAACCGCCTGATCCCTCCAACGGATCGGATTTTGTAGGCCTGATACGACGCGCTCGCGTCGCATCAGGCATCtct                                             >  2:3310078/1‑97 (MQ=21)

                                                            aCTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCgg                                       >  1:2999474/1‑100 (MQ=255)

                                                             cTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGa                                      >  1:3691416/1‑100 (MQ=255)

                                                              ttGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGAt                                     <  2:465037/100‑1 (MQ=255)

                                                               accgttggacggatcaggcgtttacgctacgtccaACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATg                                    >  1:688185‑M2/36‑100 (MQ=255)

                                                                   cTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATgcggc                                <  1:232080/100‑1 (MQ=255)

                                                                   cTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATgcggc                                <  1:2755684/100‑1 (MQ=255)

                                                                   cTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATgcggc                                <  2:2644640/100‑1 (MQ=255)

                                                                    tGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCCGGCAACAGATGCCTGATgcgacg                               <  1:3633965/100‑1 (MQ=25)

                                                                    TGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGGCGCATCAGGCATCTGTTGCCGGATgcggc                                >  1:3563896‑M1/1‑99 (MQ=255)

                                                                        CGTAGCGTAAACGCCTGAGCCGTCCAATGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCAACAGGCATCTGTTGCCGGAGGCGGCGTaaa                           >  2:1258170‑M1/1‑100 (MQ=255)

                                                                         gTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGCCGCATCCGGCAACAGATGCCTGATgcgacgctacc                          <  2:2523422/100‑9 (MQ=21)

                                                                          tAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACg                         <  2:2791934/100‑1 (MQ=255)

                                                                           aGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGc                        >  2:3167446/1‑100 (MQ=255)

                                                                           aGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGc                        >  2:1373506/1‑100 (MQ=255)

                                                                            gCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGcc                       <  1:679130/100‑1 (MQ=255)

                                                                            gCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGcc                       <  1:2613460/100‑1 (MQ=255)

                                                                            gCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGcc                       <  1:3051921/100‑1 (MQ=255)

                                                                                aaaCGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTAt                   >  1:1042273/1‑100 (MQ=255)

                                                                                 aaCGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATc                  >  2:1555618/1‑100 (MQ=255)

                                                                                 aaCGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATc                  <  1:2066470/100‑1 (MQ=255)

                                                                                     ccTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATACGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTc              <  1:539175/100‑1 (MQ=255)

                                                                                     ccTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTc              >  1:1490222/1‑100 (MQ=255)

                                                                                     ccTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGATAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTc              >  1:2672061/1‑100 (MQ=255)

                                                                                      cTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTc              <  1:643633/99‑1 (MQ=255)

                                                                                       tGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCt            <  2:147403/100‑1 (MQ=255)

                                                                                       tGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCt            <  1:3693178/100‑1 (MQ=255)

                                                                                       tGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCt            >  2:3776701/1‑100 (MQ=255)

                                                                                        gATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGTGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTa           >  2:3649520/1‑100 (MQ=255)

                                                                                        gATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTc              <  2:3419291/97‑1 (MQ=255)

                                                                                         aTCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTAc          <  2:473975/100‑1 (MQ=255)

                                                                                          tCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACg         <  1:2870280/100‑1 (MQ=255)

                                                                                            cgtccaACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGaa       <  1:3841649‑M2/94‑1 (MQ=255)

                                                                                            cgtccaACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGaa       >  1:2207487‑M2/7‑100 (MQ=255)

                                                                                            cgtccaACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGaa       <  2:109517‑M2/94‑1 (MQ=255)

                                                                                             gtccaACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAAt      <  1:810283‑M2/95‑1 (MQ=255)

                                                                                              tccaACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAAtt     <  2:3986240‑M2/96‑1 (MQ=255)

                                                                                                 aACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACt  <  1:359356‑M2/99‑1 (MQ=255)

GTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACT  >  NC_000913/837473‑837669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.