New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2539608 =NA (NA)11 (0.080) 8/166 NT NA noncoding (2/36 nt) REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2539638 = NA (NA)noncoding (32/36 nt) REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 250 total aligned reads displayed.

CTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGAGC  >  NC_000913/2539539‑2539737
                                                                                                   |                                                                                                   
cTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGt                                                                                                     >  1:2888871/1‑100 (MQ=255)
cTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGt                                                                                                     >  2:4152169/1‑100 (MQ=255)
cTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGt                                                                                                     <  1:2699003/100‑1 (MQ=255)
cTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACACACGATCTCTATCCATACGCGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGt                                                                                                     >  2:2266917/1‑100 (MQ=255)
cTTCACCAAATGCGTTTTGTCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTTGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGt                                                                                                     >  2:747408/1‑100 (MQ=37)
 ttCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGCACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTc                                                                                                    <  2:2802812/100‑1 (MQ=255)
 aatgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagaCCTGATGCGACGCTTGCGCGTCTTATCAGGTc                                                                                                    >  1:1646721‑M1/69‑100 (MQ=255)
  tCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCt                                                                                                   <  1:913917/100‑1 (MQ=255)
  atgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagaCCTGATGCGACGCTTGCGCGTCTTATCAGGTCt                                                                                                   >  1:1107731‑M1/68‑100 (MQ=255)
     ccAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACa                                                                                                >  1:2934721/1‑100 (MQ=255)
     ccAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACa                                                                                                >  2:1633224/1‑100 (MQ=255)
        gagGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGt                                                                                             <  1:2281817/100‑1 (MQ=255)
         agGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGtt                                                                                            >  1:1276152/1‑100 (MQ=255)
          ggcatATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTa                                                                                           <  1:3529626/96‑1 (MQ=255)
          ggCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTa                                                                                           <  1:2756864/100‑1 (MQ=255)
            cGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACa                                                                                         <  1:3886291/100‑1 (MQ=255)
             gTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACaa                                                                                        >  2:2681343/1‑100 (MQ=255)
              tATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACaaa                                                                                       >  2:392036/1‑100 (MQ=255)
               aTTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAAc                                                                                      >  1:4008789/1‑100 (MQ=255)
                ttGTCTATGGTGTGTTTTTATGTAGTCATGGTCTGTGTCCATACGTGGTGTTGCCTGATGCGTCGCTTTCGCGGCTTATCTGGTCTACTGGTTACGAAcg                                                                                     <  2:249070/100‑2 (MQ=255)
                   ccTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGTTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTGAAAACCTTg                                                                                  >  2:1989308/1‑100 (MQ=255)
                    cTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGATGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGc                                                                                 <  2:3340434/100‑1 (MQ=255)
                    cTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGc                                                                                 <  2:2458909/100‑1 (MQ=255)
                     tATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGcc                                                                                >  2:3178302/1‑100 (MQ=255)
                     tATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGcc                                                                                <  1:2624872/100‑1 (MQ=255)
                      aTTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCa                                                                               >  2:500967/1‑100 (MQ=255)
                        tgtttgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCAtt                                                                             <  2:1758838/100‑1 (MQ=255)
                         gtttgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTa                                                                            >  2:1684353/1‑100 (MQ=255)
                         gtttgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTa                                                                            >  2:780227/1‑100 (MQ=255)
                             gttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTCACAAACCTTGCCATTaaaaa                                                                        <  1:3923570/100‑1 (MQ=255)
                             gttCTAATGTACTCACGATCTCTATCCATACGTCGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTCCCATTaaaaa                                                                        >  2:2740691/1‑100 (MQ=255)
                              gatccgggctttttaatggcaaggtttgtaacctgtagacctgataagacgcgcaagcgtcgcatcaggCCTACAGGTTACAAACCTTGCCATTAAAAAg                                                                       >  1:3703757‑M2/70‑100 (MQ=255)
                                cTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGcc                                                                     >  2:1488873/1‑100 (MQ=255)
                                cTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGcc                                                                     >  1:3448049/1‑100 (MQ=255)
                                cTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGcc                                                                     >  1:1018715/1‑100 (MQ=255)
                                 tAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGccc                                                                    <  2:2873988/100‑1 (MQ=255)
                                  aaTGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCg                                                                   <  1:1918116/100‑1 (MQ=255)
                                  aaTGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCg                                                                   <  2:915526/100‑1 (MQ=255)
                                       aCTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATcg                                                              >  1:3920552/1‑100 (MQ=255)
                                       aCTCACGATCTCTATCCATACGTGGCGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATcg                                                              <  2:3790902/100‑1 (MQ=255)
                                        cTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATcgc                                                             >  1:255651/1‑100 (MQ=255)
                                         tCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATcgcg                                                            >  1:955563/1‑100 (MQ=255)
                                         tCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATcgcg                                                            >  1:1826907/1‑100 (MQ=255)
                                         tCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGACcgc                                                             >  2:1209048/1‑99 (MQ=255)
                                          naCGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCgg                                                           >  2:4061638/2‑100 (MQ=255)
                                          cACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCgg                                                           <  1:3253087/100‑1 (MQ=255)
                                          cACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCgg                                                           >  2:2627943/1‑100 (MQ=255)
                                           aCGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCggg                                                          >  1:4122347/1‑100 (MQ=255)
                                            cGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGa                                                         >  2:2059331/1‑100 (MQ=255)
                                            cGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGa                                                         >  2:3881236/1‑100 (MQ=255)
                                            cGATCTCTAGCCATACGTGGTGTTGCCTGATACGCCTCGTGCGCGTCTTATCAGGTCTACAGGTTGCAAACCTTGCCATTAAAAAGCCCGGAGCGCgg                                                           <  2:4129661/98‑1 (MQ=255)
                                               tctcTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAgc                                                      >  1:3409346/1‑100 (MQ=255)
                                               tctcTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAgc                                                      <  1:2475879/100‑1 (MQ=255)
                                                ctctATCCATACGTGGTGTTGCCTGATGTGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAgcg                                                     >  2:3630376/1‑100 (MQ=255)
                                                  ctATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGcc                                                   >  2:738951/1‑100 (MQ=255)
                                                  ctATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGcc                                                   >  1:1311742/1‑100 (MQ=255)
                                                    aTCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTc                                                 >  2:2352304/1‑100 (MQ=255)
                                                     tCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTcc                                                >  2:1745281/1‑100 (MQ=255)
                                                       cATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCgg                                              >  2:2657366/1‑100 (MQ=255)
                                                       cATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCgg                                              >  1:4171233/1‑100 (MQ=255)
                                                         tACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCggga                                            >  2:1036010/1‑99 (MQ=255)
                                                          aCGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCg                                           <  1:2050217/100‑1 (MQ=255)
                                                          aCGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATAAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCg                                           >  2:2222979/1‑100 (MQ=255)
                                                            gtggtgTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGtt                                         <  1:1944000/100‑1 (MQ=255)
                                                             tggtgTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGttt                                        <  2:3455922/100‑1 (MQ=255)
                                                             tggtgTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGttt                                        >  2:542447/1‑100 (MQ=255)
                                                             tggtgTTGCCTCATGCGACGATTGCGCGTCTTATCAGGTCTACAGGTTGTAAACCTTGCCATTAAAGAGCCCGGATCGCGGGAAGCGCCTCCGAGCGttt                                        <  2:3737439/100‑1 (MQ=38)
                                                               gtgtTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTaa                                      <  2:1067309/100‑1 (MQ=255)
                                                                tgtTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAAc                                     <  1:502895/100‑1 (MQ=255)
                                                                 gtTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACa                                    >  1:1904489/1‑100 (MQ=255)
                                                                  ttGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACAt                                   <  1:1620770/100‑1 (MQ=255)
                                                                  agacctgataagacgcgcaagcgtcgcatcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACAt                                   >  1:3116017‑M2/34‑100 (MQ=255)
                                                                   ngCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGCGCGGGAAGCGCCTCCGGGCGTTTAACAtt                                  >  1:2064340/2‑100 (MQ=255)
                                                                    gCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTc                                 <  1:214068/100‑1 (MQ=255)
                                                                    gCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGATACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCTCCTCCGGGCGTATaacactc                                 <  2:1143644‑M1/99‑4 (MQ=255)
                                                                     cctgataagacgcgcaagcgtcgcatcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCa                                >  2:2305329‑M2/31‑100 (MQ=255)
                                                                     CCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCa                                <  1:2689034‑M1/100‑1 (MQ=255)
                                                                      CTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCAc                               >  1:1764237‑M1/1‑100 (MQ=255)
                                                                      CTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCAc                               >  1:3871629‑M1/1‑100 (MQ=255)
                                                                       tgataagacccgcaagcgtcgcatcaggTCTACAGGTTACAAACCTTGCCATTAGAAAGCCCGGATCGCGGGAAGCGGCTCCGGGCGTTTAACATTCACt                              >  2:3085494‑M2/29‑100 (MQ=255)
                                                                          TGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCaa                           <  1:1065061‑M1/100‑1 (MQ=255)
                                                                           gCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAAc                          <  1:2352319/100‑1 (MQ=255)
                                                                            cGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAAcc                         <  1:796493/100‑1 (MQ=255)
                                                                            cGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATCAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAAcc                         <  2:1097606/100‑1 (MQ=255)
                                                                             gACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCt                        >  1:1160871/1‑100 (MQ=255)
                                                                             gACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCt                        >  1:3209904/1‑100 (MQ=255)
                                                                                 cgcaagcgtcgcatcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCa                    >  1:3649706‑M2/19‑100 (MQ=255)
                                                                                 cTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGAGTTTAACATTCACTCAACCTATCa                    >  2:302719/1‑100 (MQ=255)
                                                                                   tGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAgg                  >  2:1394735/1‑100 (MQ=255)
                                                                                    gcgcGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAGGCGCCTGCGGGCGTTTAACATTCACTCAACCTATCAGgc                 >  2:2924300/1‑100 (MQ=255)
                                                                                          cTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTtg           <  1:3301910/100‑1 (MQ=255)
                                                                                          cTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTtg           <  1:2778680/100‑1 (MQ=255)
                                                                                            tATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGTCGTTTAACATTCACTCAACCTATCAGGCGCTTtgt          >  2:1355916/1‑99 (MQ=255)
                                                                                            tATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTtgtg         <  1:4065146/100‑1 (MQ=255)
                                                                                            tATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTtgtg         <  1:3994960/100‑1 (MQ=255)
                                                                                            tATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTtgtg         >  2:311087/1‑100 (MQ=255)
                                                                                             atcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGc        <  2:1442671‑M2/94‑1 (MQ=255)
                                                                                             atcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGc        >  1:1718919‑M2/7‑100 (MQ=255)
                                                                                                  gTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACACTCACTCAACCTATCAGGCGCTTTGTGCGagag   <  1:3684625‑M2/99‑1 (MQ=255)
                                                                                                   tCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACCCCACATATCAGGCGCTTTGTGGGAGAGc  >  2:3992458/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGAGC  >  NC_000913/2539539‑2539737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.