BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	2,564,525	G→A	100%	M1M (ATG→ATA) †	yffS →	CPZ‑55 prophage; uncharacterized protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,564,525	0	G	A	100.0%	652.6 / NA	189	M1M (ATG→ATA) †	yffS	CPZ‑55 prophage; uncharacterized protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (98/91); total (98/91)

Only 100 of 189 total aligned reads displayed.

GTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCA  >  NC_000913/2564428‑2564621

ttgATCTGCGTCAATATTCTCTTCCGTTACGCTTACCCTCCACCAATACGCCTGTTAACCTCCCAATAGATTCTATGAGATGGGAGTTAAAAATCATAAg                                                                                                >  2:338973/2‑100 (MQ=255)

gtgATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAg                                                                                                <  1:2965916/100‑1 (MQ=255)

  gATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGtt                                                                                              >  2:3713942/1‑100 (MQ=255)

     cTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACg                                                                                           <  2:882485/100‑1 (MQ=255)

       gCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGTTTCTAGGAGATGGGAGATAAAAATCATAAGTTACGaa                                                                                         >  1:2911856/1‑100 (MQ=255)

         gTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAAt                                                                                       <  2:2790942/100‑1 (MQ=255)

         gTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAAt                                                                                       >  1:1352255/1‑100 (MQ=255)

             atatTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCaaa                                                                                   <  1:1660260/100‑1 (MQ=255)

              tatTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAAAGTATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCaaaa                                                                                  <  2:2440772/100‑1 (MQ=255)

                ttCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAAtt                                                                                <  2:1005284/100‑1 (MQ=255)

                ttCCCCTTCATTACGCTTACCCGCCACCAATACGCGTGTTAACCCCCCAATTGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCaaaa                                                                                  <  1:3307096/98‑1 (MQ=255)

                 tCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATCCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAAttt                                                                               >  2:784216/1‑100 (MQ=255)

                   ccTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGc                                                                             >  2:2668582/1‑100 (MQ=255)

                   ccTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGc                                                                             >  2:3339000/1‑100 (MQ=255)

                    cTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCg                                                                            <  2:2026176/100‑1 (MQ=255)

                    cTTCCGTTACGCTTACACTCCACCAATGCGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCg                                                                            <  2:3917689/100‑1 (MQ=255)

                       ccGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACa                                                                         <  2:1658563/100‑1 (MQ=255)

                        cggtACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATAGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACa                                                                         <  2:3305046/96‑1 (MQ=255)

                         gTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATc                                                                       <  2:2709622/100‑1 (MQ=255)

                         gTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGCATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATc                                                                       >  2:1839799/1‑100 (MQ=255)

                          ttACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATcc                                                                      <  2:3822088/100‑1 (MQ=255)

                             cGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCa                                                                   >  1:3946891/1‑100 (MQ=255)

                             cGCTTACCCTCCACCAATACGCGTGGTAACATCCCAATAGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAGATTTGCGACATCCTc                                                                    <  2:1471714/99‑1 (MQ=255)

                               cTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCaaa                                                                 <  1:1106252/100‑1 (MQ=255)

                               cTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCaaa                                                                 <  1:2125315/100‑1 (MQ=255)

                                 tACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAgg                                                               >  2:4101114/1‑100 (MQ=255)

                                   cccTCCGCCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGAT‑AAAACCATAAGTTACGCATTCAAAATTTGCGACATCCTCaaa                                                                 >  2:3523214/1‑95 (MQ=255)

                                    ccTCCGCCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAACTTTGCGACATCCTCAAAGgcg                                                             <  2:2607451/99‑1 (MQ=255)

                                    ccTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGgcgc                                                            <  1:1142630/100‑1 (MQ=255)

                                     cTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCt                                                           >  2:2470019/1‑100 (MQ=255)

                                     cTCCACCAATACGCGTGTTAACCTCCCAATGGATGCTATGAGATGGGAGATAAAAAACATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGgcgc                                                            <  2:359023/99‑1 (MQ=255)

                                      tCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTg                                                          >  2:3076920/1‑100 (MQ=255)

                                        caccaATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTAAAAAGCGCTGCg                                                        >  2:1425004/1‑100 (MQ=255)

                                        caccaATACGCGTGTGAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCg                                                        <  1:4101293/100‑1 (MQ=255)

                                         accaATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCg                                                        >  1:1724613/1‑99 (MQ=255)

                                           caATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATg                                                     <  1:3744186/100‑1 (MQ=255)

                                            aaTACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATgg                                                    >  1:3580418/1‑100 (MQ=255)

                                             aTACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGa                                                   >  1:2956158/1‑100 (MQ=255)

                                              tACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGaa                                                  <  1:772726/100‑1 (MQ=255)

                                               aCGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGTCATCCTCAAAGGCGCTGCGATGGAAg                                                 <  1:3091231/100‑1 (MQ=255)

                                               aCGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAg                                                 <  2:1292093/100‑1 (MQ=255)

                                               aCGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAg                                                 <  1:788886/100‑1 (MQ=255)

                                               aCGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAg                                                 <  1:704848/100‑1 (MQ=255)

                                                cgcgTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAgg                                                <  2:3021633/100‑1 (MQ=255)

                                                cgcgTGTTAACATCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAg                                                 <  2:607571/99‑1 (MQ=255)

                                                 gcgTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAgaa                                               >  2:1346093/1‑98 (MQ=255)

                                                  cgTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGAc                                              <  1:2133648/100‑1 (MQ=255)

                                                  cgTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGAc                                              <  1:3728475/100‑1 (MQ=255)

                                                   gtgtTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACa                                             <  1:2735342/100‑1 (MQ=255)

                                                    tgtTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACaa                                            <  2:3562444/100‑1 (MQ=255)

                                                     gtTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACact                                           <  1:2817665/100‑3 (MQ=255)

                                                       tAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAatat                                         <  1:3409113/100‑1 (MQ=255)

                                                        aaCCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAAtata                                        <  1:2495668/100‑1 (MQ=255)

                                                          ccTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAg                                      <  2:1204389/100‑1 (MQ=255)

                                                           cTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTAAGAAATCAAAATGAGCAACAAACTCAAAGGCACTGAGATGAAAGGACAata                                          >  2:2669843/1‑95 (MQ=255)

                                                            tcctaaTGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAggg                                    <  1:1076365/96‑1 (MQ=255)

                                                            tCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAggg                                    >  1:446980/1‑100 (MQ=255)

                                                            tCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAggg                                    <  2:1915618/100‑1 (MQ=255)

                                                             cccAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGgc                                   <  2:3991376/100‑1 (MQ=255)

                                                             cccAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGgc                                   <  2:1109193/100‑1 (MQ=255)

                                                               cAATGGATTCTATGCGATGGGAGATAACAATCATAAGTCACGAAATCAACATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGCTAATATCAggg                                    >  2:1381942/1‑97 (MQ=255)

                                                               cAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGgcgc                                 <  2:3156804/100‑1 (MQ=255)

                                                               cAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGgcgc                                 >  1:254594/1‑100 (MQ=255)

                                                               cAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGgcgc                                 >  1:3510502/1‑100 (MQ=255)

                                                                 aTGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTc                               <  2:2390145/100‑1 (MQ=255)

                                                                  tGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCa                              >  2:2099413/1‑100 (MQ=255)

                                                                   ggATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCaa                             >  2:747905/1‑100 (MQ=255)

                                                                     aTTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACg                           >  1:3126838/1‑100 (MQ=255)

                                                                     aTTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACg                           >  1:634815/1‑100 (MQ=255)

                                                                       tCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTg                         >  1:1218325/1‑100 (MQ=255)

                                                                        cTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTgg                        >  1:3156899/1‑100 (MQ=255)

                                                                        cTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTgg                        <  1:2768493/100‑1 (MQ=255)

                                                                         tATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTggg                       <  1:183466/100‑1 (MQ=255)

                                                                         tATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTggg                       <  1:2395343/100‑1 (MQ=255)

                                                                           tGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGc                     <  1:2668598/100‑1 (MQ=255)

                                                                           tGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGc                     >  1:2219987/1‑100 (MQ=255)

                                                                             agaTGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCa                   >  2:1770261/1‑100 (MQ=255)

                                                                                tGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAAt                >  1:3001606/1‑100 (MQ=255)

                                                                                tGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAAt                <  1:1628117/100‑1 (MQ=255)

                                                                                 gggAGATAAAAATCATAAGTTACGAAATAAAAATTTGAGACATCCTCAAAGGCGCGGCGATGAAAGGACAATCTAAGGGCGGTGAAGGTGGGGCGaaa                 >  2:3874660/1‑98 (MQ=255)

                                                                                  ggAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGc              <  2:2949760/100‑1 (MQ=255)

                                                                                  ggAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGc              >  2:1305576/1‑100 (MQ=255)

                                                                                   gagaTAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCg             <  1:2878254/100‑1 (MQ=255)

                                                                                     gaTAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgag           <  1:2963883/100‑1 (MQ=255)

                                                                                     gaTAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgag           <  2:1966714/100‑1 (MQ=255)

                                                                                      aTAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgagg          <  1:977016/100‑1 (MQ=255)

                                                                                      aTAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgagg          >  1:2468827/1‑100 (MQ=255)

                                                                                      aTAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgagg          <  1:1928773/100‑1 (MQ=255)

                                                                                       tAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgagga         >  2:692512/1‑100 (MQ=255)

                                                                                       tAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgagga         >  2:967795/1‑100 (MQ=255)

                                                                                       tAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgagga         >  1:892878/1‑100 (MQ=255)

                                                                                        aaaaaTCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgaggag        >  2:2493137/1‑100 (MQ=255)

                                                                                        aaaaaTCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgaggag        >  1:1251592/1‑100 (MQ=255)

                                                                                        aaaaaTCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCGCAACGTGGGGCGAAATGCgaggag        >  2:951819/1‑100 (MQ=255)

                                                                                         aaaaTCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGgaga       >  2:1565610/1‑100 (MQ=255)

                                                                                          aaaTCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGgagan      <  1:2581086/100‑2 (MQ=255)

                                                                                          aaaTCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGAt      >  1:1449921/1‑100 (MQ=255)

                                                                                          aaaTCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCGCAACGTGGGGCCAAAGGCgaggag        >  2:3676532/1‑98 (MQ=255)

                                                                                           aaTCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATc     >  1:3987504/1‑100 (MQ=255)

                                                                                             tCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGc   <  2:1941754/100‑1 (MQ=255)

GTGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCA  >  NC_000913/2564428‑2564621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`