| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,970 | G→A | 16.9% | intergenic (‑180/+128) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,970 | 0 | G | A | 16.9% | 531.9 / 81.8 | 209 | intergenic (‑180/+128) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base G (81/91); new base A (33/2); total (115/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.94e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.85e-02 | |||||||||||
Only 100 of 225 total aligned reads displayed.
CAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705871‑3706069 | cAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATg > 2:3606663/1‑100 (MQ=255)cAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATg > 2:1206310/1‑100 (MQ=255) ggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcgg > 1:3173474/1‑100 (MQ=255) gAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggc > 1:757897/1‑100 (MQ=255) gAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggc < 2:2845430/100‑1 (MQ=255) gAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggc > 2:3150108/1‑100 (MQ=255) aaTGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg < 1:2962055/100‑1 (MQ=255) aaTGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg < 1:24546/100‑1 (MQ=255) aTGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGt > 1:545022/1‑100 (MQ=255) gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa > 1:686652/1‑100 (MQ=255) gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGAGTTa > 2:3425971/1‑100 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 2:1498073/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 1:3198107/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:1370918/1‑100 (MQ=255) ctgagggATGGCGCTGCACGCAGAGGCAGCGCGTAAACGGGTGTACAGATTGTTGTCAAAGTGCGATTTGTGTATGGCGTAGCCCGCGTTAACACCttc < 2:362567/94‑2 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 1:1776977/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 2:2211313/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 1:921884/1‑100 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:3184218/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:4138406/100‑2 (MQ=37) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTCTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:2559503/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:3362380/100‑1 (MQ=255) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑a < 2:3786337/100‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACa > 1:1709447/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGGTAACGCCTTATCCGGCCT‑‑ACaa > 1:105899/1‑100 (MQ=255) cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACaaaa < 1:3568787/100‑1 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATc < 1:3646792/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCg < 1:3253302/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCg > 1:3664227/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTCTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATc > 2:3492175/1‑99 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCa > 1:2938657/1‑100 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCa < 1:3900806/100‑1 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAt < 1:3796728/100‑1 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAtt > 1:1595894/1‑100 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAtt > 1:3424797/1‑100 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTc < 2:1387920/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACGAAGTGTGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCa < 2:2809694/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCa > 2:3331702/1‑100 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATAc > 1:2310467/1‑100 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACAt < 2:3829710/100‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAGGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACAtt > 2:1571776/1‑100 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGc < 2:1950911/98‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCG‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑g < 2:1675371/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGAATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTg < 2:2903065/97‑1 (MQ=255) gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAt < 2:2441314/100‑1 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCAGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAt‑t > 2:2497849/1‑100 (MQ=255) naGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTNTCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATCGC‑A‑GAAT‑T‑‑‑ATCg > 2:1729422/2‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCg < 1:2263535/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCg < 2:2927146/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCg > 1:270774/1‑100 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTa < 2:4151717/100‑1 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGc > 2:2981095/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGcc > 1:4052532/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATGCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGcc < 2:3923117/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTg > 2:2378451/1‑100 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTg > 2:1890898/1‑100 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTg < 1:485548/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTg > 2:857927/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑GCAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGa < 2:2304540/100‑1 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGa > 1:2519310/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGa > 1:2729033/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGGCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATa > 2:2569845/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATa < 1:4047399/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGc < 2:3223122/100‑1 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCg < 1:2403402/100‑1 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCg > 1:3743788/1‑100 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCg > 2:533968/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCgg > 2:75980/1‑100 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGa < 1:1440388/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGa > 1:871732/1‑100 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGa > 1:233793/1‑99 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAg < 2:3729640/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgc > 1:2926401/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgcg > 1:2047747/1‑100 (MQ=255) ttGTTTATGCCGGATGCGCCGTTAACGCCTTATCCGGCCT‑‑ACAAACTCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCa < 1:1157764/100‑1 (MQ=255) atttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑ACAAATTC‑TGCAAATTCAACAAATTGC‑‑‑GAATCC‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCAt > 1:2671933/9‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAGATCGTGCAAATTCAATATATTGC‑A‑TGAG‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCa > 1:1294540/7‑98 (MQ=17) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCa < 2:2395782/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCa > 1:3305140/1‑100 (MQ=255) tgtaggCCGGATAAGGCGTTCACTCCGCATCCGGCCT‑‑ACAAAAGCACGCAAATTCAATATATTGC‑A‑GAGA‑T‑‑‑TGCGTAGGCCTGATAAGCGTAGCGCATc > 1:3992390/6‑99 (MQ=11) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCAT‑‑ACAAAATCGTGCTAATTCAATATATTGC‑A‑GAAA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCa > 2:4062215/5‑99 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAATCATGAAAATTCAATACATTGC‑A‑AGAT‑T‑‑‑TTCGTAGGCCTGATAAGCGTAGCGCATCAg > 2:1066045/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAAACATGCAAATTCAATAGATTGC‑A‑GAGA‑T‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATc > 2:1107003/5‑100 (MQ=12) gtaggCCGGATAAGGCGCTTACGCCGCATCCGGCCT‑‑ACAAGAACGTGCAAATTCAACAAATTGTGATGCAT‑C‑‑‑CT‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:1023285/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAGTTCGTGCAAATTCAATAAATTGC‑A‑‑ATA‑T‑‑‑GACGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3794943/4‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑ACAAAAATGTGCAAATTCAATAAATTGC‑‑‑‑AAT‑TCAACTTGTAGGCCTGATAAGCGCAGCGCATCAgg > 1:3687641/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAACCTTGCTAATTCAATATATTGC‑A‑GGGA‑C‑‑‑TATGTAGGCCTGATAAGCATAGCGCATCAGGc > 1:2551347/3‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑ACAAAACAGTGCAAATTCAATATATTGC‑A‑ATCT‑T‑‑‑CTGGTAGGCCTGATAAGCATCGCGCATCAGGCa > 1:2271325/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAGCATGAAAATTCAATATATTGC‑A‑GGAG‑C‑‑‑TGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3830939/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAGCATGAAAATTCAATATATTGC‑A‑GGAG‑C‑‑‑TGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2057983/2‑100 (MQ=17) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:933234/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1754180/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:1639382/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCTGGCCT‑‑ACAAATTCTTCCAAATTCAATATATTGC‑A‑GAAA‑T‑‑‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1641078/1‑99 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑ACAAATTC‑TGCAAATTCAACAAATTGC‑‑‑GAATCC‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:743393/1‑100 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAACTGTGCAAATTCAATATATTGC‑A‑GGAA‑A‑‑‑CACGTAGGCCTGATAAGCGAAGCGCATCAGGCag > 1:2784636/1‑99 (MQ=18) aTGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:3461475/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:919456/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2947696/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:3401998/100‑1 (MQ=255) | CAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705871‑3706069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |