| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,985 | T→C | 24.3% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 24.3% | 517.8 / 168.6 | 259 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (88/108); new base C (60/3); total (148/111) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.94e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.01e-02 | |||||||||||
Only 100 of 264 total aligned reads displayed.
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084 | ctgagggATGGCGCTGCACGCAGAGGCAGCGCGTAAACGGGTGTACAGATTGTTGTCAAAGTGCGATTTGTGTATGGCGTAGCCCGCGTTAACACCttc < 2:362567/94‑2 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 2:2211313/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:3776470/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCGCATCCGGc < 2:1624355/99‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:4138406/100‑2 (MQ=37) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGCGCGCTTCGTTTATGCCCGATGCGGCGCTAACGCCTTCCCCGGCCTa > 2:1857371/1‑100 (MQ=25) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc > 2:348834/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGGTAACGCCTTATCCGGCCTAC‑aa > 1:105899/1‑100 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt < 1:3178730/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:3737482/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGACGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 1:2927163/1‑100 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:3907159/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 1:3900806/100‑1 (MQ=255) ggCCCAGCCCCACCGAGTATACATATCGTTGACAAAGTGCGCTTTGTTTGTGCCGGAGGCGGCGTTACCGACTTATCCGGCCTAC‑ACAACCGTGCa < 2:3158118/96‑1 (MQ=17) agCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 2:1754591/2‑100 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 2:1387920/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:3087705/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:144595/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATa < 1:3314644/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCAGCCTAC‑AAAATCGTGCAAATTCAATa < 1:2713647/100‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc > 1:2310467/1‑100 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc < 1:3291938/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCGAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑g < 2:1675371/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGAATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg < 2:2903065/97‑1 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑Ga < 1:2768258/100‑1 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTCC‑AAAATCGTGCAAATTCAATACATTGc > 2:2491604/1‑96 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑Gaa > 1:919460/1‑100 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAt‑‑t‑‑‑t < 1:2488960/100‑1 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGTATTCGGCGTTAACTCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAt‑‑t‑‑‑t‑t > 1:2268689/1‑100 (MQ=255) cgatctgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑g < 2:2288436/95‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTa > 1:2568812/1‑100 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTa < 2:4151717/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTa > 1:3397320/1‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGc > 2:2981095/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGcc < 1:2124849/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGcc > 1:4052532/1‑100 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTg > 2:2378451/1‑100 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTg > 2:857927/1‑100 (MQ=255) cgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTg > 2:281776/2‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATa < 1:871671/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATa < 1:4047399/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATa < 2:2646751/100‑1 (MQ=255) aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATaa > 2:3743007/1‑100 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCg > 2:2916819/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCgg > 2:75980/1‑100 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGa > 1:233793/1‑99 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAg < 2:3729640/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAgcg < 1:281779/100‑1 (MQ=255) attttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCTAATTCAATATATTGC‑A‑GAAA‑‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAgcgc > 1:1406379/10‑100 (MQ=17) ttGTTTATGCCGGATGCGCCGTTAACGCCTTATCCGGCCTAC‑AAACTCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:1157764/100‑1 (MQ=255) atttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑GAATC‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCAt > 1:2671933/9‑100 (MQ=18) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCAt < 2:1924994/100‑1 (MQ=255) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑A‑TGAG‑‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCa > 1:1294540/7‑98 (MQ=17) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 2:2395782/100‑1 (MQ=255) gtaggCCGGATAAGGCGCTTACGCCGCATCCGGCCTAC‑AAGAACGTGCAAATTCAACAAATTGTGATGCAT‑‑C‑‑‑C‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:1023285/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGC‑A‑‑ATA‑‑T‑‑‑G‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3794943/4‑100 (MQ=18) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTCC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGACCTGATAAGAGGAGCGCATCAgg < 2:2567147/100‑1 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑A‑GAAA‑‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3633099/3‑100 (MQ=17) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑‑AAT‑‑TCAAC‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 1:3687641/3‑100 (MQ=21) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGC‑ATGGGC‑‑C‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3332077/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGT‑G‑GGCT‑‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1516650/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑A‑GGAG‑‑C‑‑‑T‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3830939/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑A‑GGAG‑‑C‑‑‑T‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2057983/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑A‑ATCT‑‑C‑‑‑C‑GT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3660336/2‑100 (MQ=18) ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:1366761/2‑99 (MQ=18) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:933234/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1754180/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGC‑A‑GAAA‑‑T‑‑‑C‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1641078/1‑99 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑GAATC‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:743393/1‑100 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGA‑T‑CGAT‑‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:3517283/1‑99 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑AAT‑‑C‑‑‑T‑CCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:3561992/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGC‑AGGGAC‑‑T‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCagc > 1:2655868/9‑98 (MQ=18) ccGGATGCGGAGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGACCTGATAAGCTGAGCGCATAACGCAtt > 2:2547629/1‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑GAAT‑‑C‑‑‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 1:4005093/7‑98 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑A‑‑ATTCAA‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 1:2392307/7‑97 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGC‑A‑AGAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgct > 1:2524187/7‑96 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑A‑GGAG‑‑C‑‑‑T‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:535835/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGC‑AGGAAC‑‑G‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 1:3390970/7‑96 (MQ=25) ggacaaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGC‑A‑AGAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgct > 2:1197906/7‑96 (MQ=17) gataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑A‑GGAC‑‑C‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 2:2828621/6‑100 (MQ=18) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:3438729/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2947696/100‑1 (MQ=255) aggcgTTAACGCCTTTTTTGGCCTAC‑TAAATCATGCAAATTCAATTCATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTAATAAGCGGAGCGCATCAGGCATTtttgc > 2:3554594/2‑98 (MQ=18) ngcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATCtttgcctt > 2:1041620/2‑100 (MQ=255) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt < 2:11452/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:320447/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:481015/100‑1 (MQ=255) cgTTAACGCCTTATCCGACCAAC‑‑AAATTATGCAACTCCACAATATTGC‑A‑GAAA‑‑T‑‑‑T‑AA‑‑GTAGGACTTATAAGCATAACGCATAAAACAtttattcgttt > 2:329578/1‑90 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TT‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:883385/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:3215199/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:1096380/100‑1 (MQ=255) aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:3365096/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 1:1718252/100‑1 (MQ=255) cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAACGCATCAGGCATTTTTGCCTTTGCCATCa > 2:3967615/1‑100 (MQ=255) gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGGCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:3960608/100‑1 (MQ=255) gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCan < 2:535133/100‑2 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 1:3105986/1‑100 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 1:3015510/1‑100 (MQ=255) ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:441288/100‑1 (MQ=255) tATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt < 1:1890908/100‑1 (MQ=255) | GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |