| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,665,195 | (T)7→8 | intergenic (+75/‑120) | dmsD → / → clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,665,188 | 1 | . | T | 90.3% | 201.4 / 15.2 | 62 | intergenic (+68/‑127) | dmsD/clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
| Reads supporting (aligned to +/- strand): ref base . (3/3); new base T (30/26); total (33/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.08e-01 | |||||||||||
TTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑TT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATG > NC_000913/1665089‑1665281 | ttCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACg < 2:948319/100‑1 (MQ=255) tGTCGCGGTTAAACCGCTGGTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGGTACAGTGTCACG‑tt‑tt > 2:809205/1‑100 (MQ=255) cgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑tt‑tt‑tttta < 2:1640838/100‑3 (MQ=255) cgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑tt‑tt‑tttta < 2:1668122/100‑3 (MQ=255) gTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑tt‑tt‑ttttatc < 1:587211/100‑5 (MQ=255) gTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑tt‑tt‑ttttatc > 1:737308/1‑96 (MQ=255) ttAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑tt‑tt‑ttttatct > 2:1361023/1‑95 (MQ=255) ttAAACCGCTGTTTCGATAGGATCACCGTAATATCGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑tt‑tt‑ttttatct < 2:1080368/100‑6 (MQ=255) aaCCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCtt < 2:733477/100‑1 (MQ=255) aCCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTa < 2:1619164/100‑1 (MQ=255) aCCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑TT‑TT‑TTTATCTCTTaa > 1:1494555/1‑100 (MQ=255) ccGCTGTTTCGATAGGATCACCGTAATATTGCGGGATGGTGACGATTACGCGAAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTaa < 2:64567/100‑1 (MQ=255) ccGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑TT‑TT‑TTTATCTCTTaaa < 2:1494546/100‑1 (MQ=255) gTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAg > 1:827997/1‑97 (MQ=255) tttCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAgcacg < 1:520440/100‑1 (MQ=255) tttCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑TT‑TT‑TTTATCTCTTAAAgcacgc < 1:1841843/100‑1 (MQ=255) ttCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAgcacgc < 2:1768148/100‑1 (MQ=255) tCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAgcacgca > 2:1846665/1‑100 (MQ=255) cGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGCCACGTTT‑TT‑TTTATCTCTTAAAgcacgcac < 2:1794126/100‑1 (MQ=255) gATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACt < 1:1120005/100‑1 (MQ=255) gATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACt > 1:31195/1‑100 (MQ=255) aTAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTg > 1:2040248/1‑100 (MQ=255) ggATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCtt > 1:1494478/1‑100 (MQ=255) gATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCttt > 2:1520767/1‑100 (MQ=255) cACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGc > 1:621724/1‑100 (MQ=255) aCCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCg < 2:1842932/100‑1 (MQ=255) ccGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCgg > 1:1710695/1‑100 (MQ=255) ccGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCgg > 2:136482/1‑100 (MQ=255) cGTAATATGGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGc < 1:1403948/100‑1 (MQ=255) gTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCt < 2:1965979/100‑1 (MQ=255) gTAATATTGCCGGATGGTGACGATTACGCGCAATCCAGCAATAATAGGTTACAGTGTCACG‑TT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTg > 1:1441400/1‑100 (MQ=255) tAATATTGCCGGTTGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTg < 2:529694/100‑1 (MQ=255) tAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTg < 1:1853352/100‑1 (MQ=255) aaTATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTgg > 1:840407/1‑100 (MQ=255) atatTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGc < 2:448122/100‑1 (MQ=255) tatTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGcc < 2:488124/100‑1 (MQ=255) tatTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGcc > 2:1968475/1‑100 (MQ=255) gCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCtt > 2:1134467/1‑100 (MQ=255) gATGGTGACGATTACGCGCCATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGc < 1:809208/100‑1 (MQ=255) gATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGc < 1:1672611/100‑1 (MQ=255) aTGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGcc > 2:1435070/1‑100 (MQ=255) tGGTGACGATTACGCTCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCg < 1:1428305/100‑1 (MQ=255) tGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCg < 2:1318790/100‑1 (MQ=255) ggTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGc < 2:840404/100‑1 (MQ=255) ggTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGc < 2:730759/100‑1 (MQ=255) ggTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGc > 2:1591008/1‑100 (MQ=255) gTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCa > 2:724931/1‑100 (MQ=255) tGACGATTACGCGGAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGAACGCACTTCTTTTGCGGCTGTCCTCTTTTGCCGCa > 2:1259684/1‑99 (MQ=255) cgcgCAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGc > 2:1087901/1‑100 (MQ=255) gcgcAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGcc < 1:890713/100‑1 (MQ=255) gcgcAATCCGGCAATAATAGGTTACAGTGTCACG‑TTATT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGcc < 1:1435079/100‑1 (MQ=255) gcAATCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCg > 2:154454/1‑100 (MQ=255) aTCCGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCgtgt > 2:791439/1‑100 (MQ=255) cGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTTTTTTTTTTAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTc > 2:1300191/1‑100 (MQ=255) cGGCAATAATAGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTc > 1:88952/1‑100 (MQ=255) ataataGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCAtt > 2:1721850/1‑98 (MQ=255) ataataGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGc > 2:1721933/1‑100 (MQ=255) taataGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCTTTGcc > 2:1362092/1‑100 (MQ=255) taataGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGcc > 1:1781172/1‑100 (MQ=255) cttccgatctcAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGcc < 1:1068015/90‑1 (MQ=255) aataGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGccc < 2:1494469/100‑1 (MQ=255) aataGGTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGcc > 2:1310905/1‑99 (MQ=255) gTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCCCTGCTTTTGCGGCTGGCCTGTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTc < 2:1116570/100‑1 (MQ=255) gTTACAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTc < 2:630408/100‑1 (MQ=255) cAGTGTCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGccagatcggaag > 2:1068010/1‑90 (MQ=255) aGTGTCACG‑TT‑TTATTTATCTCTTAAAGCACGCACTGCGTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCAATGCCCATTTCTGCTc > 2:1261946/1‑100 (MQ=255) gtgtCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCa > 2:196407/1‑100 (MQ=255) tgtCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCAt > 2:1350725/1‑100 (MQ=255) gtCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATg < 1:313738/100‑1 (MQ=255) gtCACGTTT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATg > 2:662400/1‑100 (MQ=255) | TTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACG‑TT‑TT‑TTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATG > NC_000913/1665089‑1665281 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |