| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 497,139 | (T)5→6 | intergenic (+145/‑36) | htpG → / → adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 497,134 | 1 | . | T | 98.6% | 259.5 / ‑3.6 | 72 | intergenic (+140/‑41) | htpG/adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base T (38/33); total (38/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCATCATCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGC‑TTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCAG > NC_000913/497037‑497228 | tcatcaTCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGC‑tt > 1:337045/1‑100 (MQ=255) catcatCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGC‑ttt > 2:1769664/1‑100 (MQ=255) tcatcTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGC‑ttttt > 1:1289051/1‑100 (MQ=255) catcTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGC‑tttttt < 1:217312/100‑2 (MQ=255) tcTGCAATTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGC‑ttttttca < 1:379024/100‑4 (MQ=255) cTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGC‑ttttttcaa > 2:379023/1‑96 (MQ=255) cTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGC‑ttttttcaa > 1:344263/1‑96 (MQ=255) cTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAAt < 2:1625606/100‑1 (MQ=255) tttCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAAtt < 1:1893896/100‑1 (MQ=255) tCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCg < 1:1684642/100‑1 (MQ=255) ccGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGa > 1:1882519/1‑100 (MQ=255) cGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGac > 2:829431/1‑100 (MQ=255) gCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGaca > 1:1773484/1‑100 (MQ=255) gCAAATTATCTCGCCATTAACCGTTGCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGac < 2:221547/99‑1 (MQ=255) cAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGacac < 2:164281/100‑1 (MQ=255) aaTTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACAt < 1:1182569/100‑1 (MQ=255) ttATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACAttt < 1:1453457/100‑1 (MQ=255) tATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACAttgt > 1:1057004/1‑98 (MQ=255) ctcGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAg > 2:391182/1‑100 (MQ=255) ctcGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAg > 1:313154/1‑100 (MQ=255) tcGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAgg > 2:1901720/1‑100 (MQ=255) tcGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAgg > 1:1776713/1‑100 (MQ=255) cGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAggg < 2:575300/100‑1 (MQ=255) cGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAAGCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAggg < 2:1432570/100‑1 (MQ=255) gCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAgggg > 1:105015/1‑100 (MQ=255) ccATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGa > 2:300216/1‑100 (MQ=255) ccATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGa < 1:1290578/100‑1 (MQ=255) aCCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACTCATTTTAAGGGGATTTTCg > 2:461303/1‑100 (MQ=255) aCCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCg < 2:1448219/100‑1 (MQ=255) ccGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGc > 1:1754034/1‑100 (MQ=255) ccGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGc < 2:1884557/100‑1 (MQ=255) cGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCa < 1:473471/100‑1 (MQ=255) cGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCa < 2:1726270/100‑1 (MQ=255) cGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCa < 1:514653/100‑1 (MQ=255) cGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCa > 1:1413809/1‑100 (MQ=255) tttCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGCGATTTTCGCAAt < 1:1343803/100‑1 (MQ=255) tCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGc < 2:105014/100‑1 (MQ=255) cAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTTAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCg > 2:2011877/1‑100 (MQ=255) cAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCg < 1:576126/100‑1 (MQ=255) gCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTa > 1:1262706/1‑100 (MQ=255) gCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTa < 1:967473/100‑1 (MQ=255) cccAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATc < 1:1769678/100‑1 (MQ=255) cAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATAAAA‑TAAAAAAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCAt < 2:526603/100‑1 (MQ=255) cAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCAt < 2:1857019/100‑1 (MQ=255) gCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGc < 1:93888/100‑1 (MQ=255) ccTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCt > 1:1588419/1‑100 (MQ=255) ccTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCt > 1:1588320/1‑100 (MQ=255) cTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCtt > 2:1067088/1‑100 (MQ=255) tttCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTTTTTTTTTTTGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCtt > 2:219807/1‑99 (MQ=255) ttCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTgg < 1:2023506/100‑1 (MQ=255) ttCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTgg < 2:337044/100‑1 (MQ=255) tCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGgc < 1:752395/100‑1 (MQ=255) tGAGGCAATCGCCTGTGGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCt > 1:468997/1‑100 (MQ=255) gAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTc > 2:548222/1‑100 (MQ=255) aGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATAATTCTGCTTGGCGCTc > 2:1992394/1‑99 (MQ=255) ggCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCg > 1:1186132/1‑100 (MQ=255) ggCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCg > 2:155006/1‑100 (MQ=255) ggCAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCg > 1:1282317/1‑100 (MQ=255) cAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCATAAAATTCGACACATTTTACGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCggg > 2:1433538/1‑100 (MQ=255) cAATCGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCggg > 2:685501/1‑100 (MQ=255) cGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAATAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGgcgc > 2:488147/1‑99 (MQ=255) cGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGcgcg < 1:829434/100‑1 (MQ=255) cGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGcgcg > 2:451933/1‑100 (MQ=255) cGCCTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGcgcg < 2:313153/100‑1 (MQ=255) ccTGTTTGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCggg < 2:953882/100‑1 (MQ=255) ccTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCggg < 1:1803967/100‑1 (MQ=255) cTGTTGGTGGTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCgggg < 2:1289045/100‑1 (MQ=255) tGTTGGTGGTATCGTTTAT‑CGCTTTTTTTTTTTTTTTTTACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCgggg > 2:1582045/1‑99 (MQ=255) tggtggTATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGAGGGGAAAg > 2:1227251/1‑100 (MQ=255) gtggtATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAggg < 1:488148/100‑1 (MQ=255) gtATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACt > 1:1864844/1‑100 (MQ=255) gtATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACt < 1:1901738/100‑1 (MQ=255) gtATCGTTTAT‑CACTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACt > 1:1342846/1‑100 (MQ=255) tATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTc > 1:57409/1‑100 (MQ=255) tATCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTc < 2:1413800/100‑1 (MQ=255) aTCGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCa > 2:1345536/1‑100 (MQ=255) cGTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAgg > 2:1824326/1‑100 (MQ=255) gTTTAT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGc > 1:636656/1‑100 (MQ=255) aT‑CGCTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCAg > 2:12760/1‑100 (MQ=255) | TCATCATCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAT‑CGC‑TTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCAG > NC_000913/497037‑497228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |