Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_000913 190,553 Δ14 bp coding (680‑693/726 nt) rpsB → 30S ribosomal subunit protein S2

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1905523 (0.040)74 (0.900) 60/196 0.3 96.1% coding (679/726 nt) rpsB 30S ribosomal subunit protein S2
?NC_000913 190567 = 3 (0.040)coding (694/726 nt) rpsB 30S ribosomal subunit protein S2

CGGTGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/190455‑190552
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCGG  >  NC_000913/190567‑190665
                                                                                                                                                                                                     
CGGTGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCA                                                                                                   <  1:695732/100‑1
 GGTGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTCGCTGCAACCGTACGTGAAGGCCGTTCTCCAG                                                                                                  <  2:336362/100‑1
    GTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCG                                                                                               >  2:1537949/1‑100
    GTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCG                                                                                               >  2:1537324/1‑100
         CTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGA                                                                                          >  1:1871560/1‑100
          TTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAA                                                                                         <  2:953645/100‑1
           TCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAA                                                                                        >  2:884198/1‑100
            CGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAG                                                                                       <  2:1172408/100‑1
            CGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAG                                                                                       <  1:2004908/100‑1
             GTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGC                                                                                      <  1:64069/100‑1
               TATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTT                                                                                    <  1:1008853/100‑1
                ATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTC                                                                                   >  1:997421/1‑100
                 TCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCG                                                                                  <  1:1421575/100‑1
                  CCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGT                                                                                 <  2:107612/100‑1
                   CCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTA                                                                                <  1:1096909/100‑1
                    CGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAG                                                                               >  1:527252/1‑100
                    CGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAG                                                                               <  2:929968/100‑1
                     GGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGA                                                                              >  1:899393/1‑100
                      GGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAA                                                                             <  2:201526/100‑1
                       GTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAG                                                                            <  1:1590982/100‑1
                       GTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCGGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAG                                                                            <  2:1172559/100‑1
                            GACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAG                                                                       >  1:1337433/1‑100
                            GACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAG                                                                       <  2:1598796/100‑1
                              CGACGCAATCCATGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTATCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTA                                                                     >  2:1076281/1‑100
                               GACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAA                                                                    >  1:2032308/1‑100
                                 CGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATA                                                                  >  1:271439/1‑100
                                   CAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCCCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAG                                                                <  2:1262507/100‑1
                                    AATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGG                                                               >  1:408365/1‑100
                                       CCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCATTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTT                                                            <  2:1457139/100‑1
                                        CGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTn                                                           <  1:222498/100‑2
                                          TGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGTAAGAAGGCTTCGTAGAAGCTGAGTAATAAGGCTTGAT                                                         >  2:1374493/1‑100
                                          TGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGAT                                                         <  1:1210561/100‑1
                                             TGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAAC                                                      >  1:548876/1‑100
                                             TGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAAC                                                      >  1:1267991/1‑100
                                              GTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGGTAACT                                                     >  2:43454/1‑100
                                                GACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCC                                                   >  1:1298224/1‑100
                                                   CCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCC                                                <  1:602779/100‑1
                                                    CTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCA                                               <  2:1774231/100‑1
                                                      GTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAA                                             >  1:360822/1‑100
                                                      GTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAA                                             <  1:326471/100‑1
                                                       TACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAA                                            >  1:1578123/1‑100
                                                        ACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAAT                                           >  2:1703009/1‑100
                                                        ACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAAT                                           <  2:1144607/100‑1
                                                        ACCTGGGCGCTGTCGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAAT                                           >  1:2021615/1‑100
                                                             GGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTC                                      <  2:527251/100‑1
                                                              GCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGGTAACTCCCCCAAAATAGTTCG                                     <  1:43454/100‑1
                                                                  TGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTT                                 >  1:1888790/1‑100
                                                                    TTGCTGCAACCGTACGTGAATTCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGC                               <  2:184133/100‑1
                                                                    TTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGC                               <  1:884201/100‑1
                                                                     TGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCA                              >  2:431371/1‑100
                                                                     TGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCA                              >  2:491860/1‑100
                                                                      GCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCcg                             >  1:1718327/1‑98
                                                                      GCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAG                             <  2:1871543/100‑1
                                                                       CTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGA                            <  2:1888772/100‑1
                                                                         GCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAA                          >  2:425786/1‑100
                                                                         GCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAA                          <  2:1337424/100‑1
                                                                         GCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAA                          >  2:1337054/1‑100
                                                                          CAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAG                         >  2:516535/1‑100
                                                                              CGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGG                     <  1:466840/100‑1
                                                                              CGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGG                     >  2:1335198/1‑100
                                                                               GTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGC                    <  1:1726902/100‑1
                                                                                TACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCA                   <  2:2021597/100‑1
                                                                                  CGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAG                 >  2:1004848/1‑100
                                                                                    TGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCT               >  2:7209/1‑100
                                                                                    TGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCT               >  2:187562/1‑100
                                                                                      AAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAGCTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCG             <  2:2021738/100‑1
                                                                                      AAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCG             <  2:997417/100‑1
                                                                                       AGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGA            <  2:2016193/100‑1
                                                                                       AGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGA            <  2:1331463/100‑1
                                                                                       AGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGA            <  2:1331671/100‑1
                                                                                         GCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGA          <  2:408364/100‑1
                                                                                            GTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCCGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATT       >  1:849282/1‑100
                                                                                              TCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCC     >  1:634708/1‑100
                                                                                              TCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCC     >  2:160044/1‑100
                                                                                                 CCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCGG  >  1:1398452/1‑100
                                                                                                                                                                                                     
CGGTGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/190455‑190552
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCGG  >  NC_000913/190567‑190665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.