New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2118562 =	76 (0.910)	10 (0.160) +CTACAAGACCCGAGCACAGAACC	9/152	7.7	14.7%	noncoding (97/186 nt)	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913	4285302 =	NA (NA)					noncoding (1/77 nt)	REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

CTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2118612‑2118562 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAGGCCGGATAAGGCG‑TTTACGCCGCATCCGGCAATCAATGCCTGATGC  >  NC_000913/4285302‑4285351                                                    |||||||||||||||||||||||                                                    CTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCC                           >  1:735102/1‑100             CCTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAAc               >  1:45882/1‑99               TGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCG‑TTCACGCCGCATCCGGCATTCAg            >  1:1934062/1‑99                   GGCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCG‑TTCACGCCGCATCCGGCATTCAGTGCC        >  1:1083081/1‑100                   GGCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCG‑TTCACGCCGCATCCGGCATTCAGTGCC        >  1:715533/1‑100                    GCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCG‑TTCACGCCGCATCCGGCATTCAGTGCCT       >  1:1154780/1‑100                     CCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCG‑TTCACGCCGCATCCGGCATTCAGTGCCTG      >  1:1911877/1‑100                       TGATAAGACGCGTCAGCGTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCG‑TTCACGCCGCATCCGGCATTCAGTGCCTGAT    >  1:280338/1‑100                        GATAAGACGCGTCAGCGTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCG‑TTCACGCCGCATCCGGCATTCAGTGCCTGATG   >  1:1930436/1‑100                         ATAAGACGCGTCAGCGTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCG‑TTCACGCCGCATCCGGCATTCAGTGCCTGATGC  <  2:1934044/100‑1                                                    |||||||||||||||||||||||                                                    CTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2118612‑2118562 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAGGCCGGATAAGGCG‑TTTACGCCGCATCCGGCAATCAATGCCTGATGC  >  NC_000913/4285302‑4285351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.