| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 34.9% | 181.8 / 129.0 | 126 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (44/38); new base C (41/3); total (85/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.63e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.88e-01 | |||||||||||
Only 100 of 127 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTC > NC_000913/3705886‑3706082 | tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt < 1:1573288/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:513448/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt < 1:1175273/100‑1 (MQ=255) tgcCGGGTGGCGCCGCACGCAGAGGCACAGCGCCCCCGGGGATACAGATTGTTGACAAAACGCGCCTTGTTTTTTCCGGGTGCGGGGGTAACACCCTAt > 2:812873/1‑99 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAtgc > 2:1239799/1‑98 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:1692397/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 1:1042429/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 2:100884/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 1:1276452/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCggn < 2:130339/100‑2 (MQ=37) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTa < 1:754256/100‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACa > 1:369723/1‑100 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGACCTACa < 1:1230610/100‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATACCGGATGCGGCGTTAACGCCTTATCCGGCCTACa > 2:1076651/1‑100 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAAt < 1:1538744/100‑1 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAAt < 2:1529846/100‑1 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATc > 2:917648/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg < 2:1330249/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGc < 1:1948479/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGc < 2:918729/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGc < 2:75817/100‑1 (MQ=255) gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCaaa > 1:1580336/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa > 1:1493951/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa > 1:225286/1‑100 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCaa < 1:1949254/100‑1 (MQ=255) cagtgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAt < 2:1629131/96‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAt < 1:917652/100‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATAc > 2:1997445/1‑100 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAACTCAATAc < 1:1078162/100‑1 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑Ga > 1:1145712/1‑100 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑At‑t‑‑‑t < 1:1976458/100‑1 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑At‑t‑‑‑tt > 1:1305967/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTc > 2:1962867/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTc > 2:372873/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑g < 1:831111/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTa < 1:1493074/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTa < 1:1814764/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGcc > 1:1016987/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGa > 1:530511/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGa < 1:513449/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATa < 2:1145706/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATa > 2:667439/1‑100 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCg > 2:1777728/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg > 2:1530745/1‑100 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc > 2:1740492/1‑100 (MQ=255) gaatttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAgcgc > 1:446531/11‑100 (MQ=17) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:1234768/1‑100 (MQ=255) attttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATACAAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAgcgc > 1:1189078/10‑100 (MQ=17) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCA‑GG‑AT‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:1717047/8‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATACAAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:933144/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCGCTTAAATTCAATATATTGCA‑CC‑AT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:863018/7‑100 (MQ=21) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 1:607170/100‑1 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 1:115794/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 2:90517/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 2:1295220/1‑100 (MQ=255) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg > 1:1382930/1‑100 (MQ=255) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg > 2:802348/1‑100 (MQ=255) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGG‑GC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:1353622/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:724531/5‑100 (MQ=17) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGG‑GC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg < 2:1353613/97‑1 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCATGAAAATTCAATACATTGCA‑AG‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2256/4‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTTTGCAAATTCAATATATTGC‑‑‑A‑AT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:779351/4‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1819984/3‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGG‑GC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:826989/3‑100 (MQ=17) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAACAGTGCAAATTCAATATATTGCA‑AT‑CT‑T‑‑‑CTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGc > 1:852674/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCA‑GG‑AA‑A‑‑‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGc > 2:170194/3‑100 (MQ=18) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:529570/1‑100 (MQ=255) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:44662/1‑100 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:1504659/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:760413/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCATGAAAATTCAATACATTGCA‑AG‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:162785/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCATGAAAATTCAATACATTGCA‑AG‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1234892/2‑100 (MQ=17) ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:1502069/2‑100 (MQ=18) ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:576395/2‑100 (MQ=18) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1175680/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:718180/1‑100 (MQ=255) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 1:96428/9‑100 (MQ=21) ccGGATGCGGCGTTAACGCCTTATCCAGCCTACAACATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1408652/1‑100 (MQ=255) cggataaggcgTTCACGCCGCATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGAT‑CG‑AT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtt > 2:1176964/8‑97 (MQ=21) cggataaggcgTTCACGCCGCATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGAT‑CG‑AT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 1:1643817/8‑100 (MQ=18) ngataaggcgTTCACGCCGCATCCGGCCTACAAAAATATGCAAATTCAATAGATTGCA‑GAGAT‑T‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:1439136/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:393829/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTACAAAATCGCTTAAATTCAATATATTGCA‑CC‑AT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 1:1798937/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:507001/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCA‑GG‑AA‑A‑‑‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCAgttt > 2:866043/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGA‑AC‑G‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 1:1654243/7‑96 (MQ=25) gataaggcgTTCACGCCGCATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCA‑GG‑AA‑C‑‑‑GAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaactac > 1:1824891/6‑95 (MQ=25) gATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt < 1:1013930/100‑1 (MQ=255) taaggcgTTTACGCCGCATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGC‑‑‑A‑AT‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCAatttgg > 2:1131838/4‑98 (MQ=21) tGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 2:1134089/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:440645/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:422702/1‑100 (MQ=255) ttAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 2:1692384/100‑1 (MQ=255) aaCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:1014562/1‑100 (MQ=255) aaCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:1571042/1‑100 (MQ=255) cGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa < 2:369722/100‑1 (MQ=255) gCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 1:773789/1‑100 (MQ=255) gCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 1:970815/1‑100 (MQ=255) cTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc > 1:2043573/1‑100 (MQ=255) cTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc > 1:1936503/1‑100 (MQ=255) | TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTC > NC_000913/3705886‑3706082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |