| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4415962 = | NA (NA) | 15 (0.100) | 11/166 | NT | NA | noncoding (5/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4415992 = | NA (NA) | intergenic (+92/+25) | aidB/yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein | |||||
AGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4416065‑4415962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACC > NC_000913/4415992‑4416090 AGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTC > 1:3653309/1‑100 GACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCC < 1:1343385/100‑1 GACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCC < 2:1856928/100‑1 ACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCG > 2:1788993/1‑100 ACCAGCAGCCTGATAACTAGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCACATGAACAATACCGGATGCGGCGCGAGCGCCTTGTCCG > 1:3020936/1‑100 CCAGCAGCCTGATAACTGGCGCGTGCAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGG > 2:952130/1‑100 CCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGG > 2:978614/1‑100 CCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGG > 1:2930982/1‑100 CAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC < 2:1987686/100‑1 CGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAG > 2:3683201/1‑100 CAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACA > 2:3454413/1‑100 CAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCA > 2:2844738/1‑100 ATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTGGATTTGCTGTAGATGACACTCATGCATACAGTATCGCATGTACACGACATTTATC > 1:2944269/1‑100 GAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAG > 2:4244428/1‑100 GAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCA > 1:203981/1‑99 CAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTCGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCT > 1:2419314/1‑100 AATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 1:470573/1‑100 AATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 2:2252806/1‑100 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGC > 2:1086078/1‑100 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGC > 1:1609115/1‑100 TGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCT > 1:2929376/1‑100 GCCGGATGCGGCGCGAGCGCCTTGTCCGACATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTG > 1:2506435/1‑100 CGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAA < 1:1086075/100‑1 CGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAA < 1:3454400/100‑1 gatctCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAAT < 2:2313875/95‑1 TCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCG < 2:1107800/100‑1 TCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCG > 2:3571032/1‑100 CCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGG < 2:2241644/100‑1 CCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGG < 1:4117838/100‑1 CCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGC < 1:1457343/98‑1 CGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATagatc > 1:2313869/1‑95 CGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGT > 2:838764/1‑100 GGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTA > 2:2507971/1‑100 GCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTAC < 2:2687350/100‑1 GCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTAC < 2:3643468/100‑1 CATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACC < 1:843829/100‑1 AGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4416065‑4415962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACC > NC_000913/4415992‑4416090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |