New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1145931 =	NA (NA)	7 (0.050)	5/162	NT	NA	noncoding (4/75 nt)	REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	1145963 =	NA (NA)					noncoding (36/75 nt)	REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences

GAAGGGAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1146037‑1145931 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggccGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACACAGCGC  >  NC_000913/1145963‑1146061                                                                                                                                                                                                                GAAGGGAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTA                                                                                                            <  1:4087636/100‑1  AAGGGAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTAT                                                                                                           >  2:3156006/1‑100   AGGGAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATC                                                                                                          <  1:1832824/100‑1   AGGGAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATC                                                                                                          >  2:683068/1‑100    GGGAAAAACCCGCTGATGGGATAGTTTTTTTCGTCGGTTGTAGTTACGTCGCATCCGGCAATCGGTGCTGGCGTCCTGTTGCGGCGTAAACGCCTTATC                                                                                                          >  1:2335064/1‑99    GGGAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCA                                                                                                         >  2:3149830/1‑100    GGGAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCA                                                                                                         >  1:992636/1‑100     GGAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAG                                                                                                        <  2:657958/100‑1     GGAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAG                                                                                                        <  1:3839144/100‑1      GAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGGGGCGTAAACGCCTTATCAGG                                                                                                       >  1:1966999/1‑100      GAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGG                                                                                                       >  2:3436586/1‑100      GAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGG                                                                                                       >  2:2415257/1‑100      GAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAG                                                                                                        >  2:775467/1‑99      GAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCA                                                                                                         >  2:4196178/1‑98      GAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATAAGGCGTTTACGCCGCATCAGG                                                                                                       <  1:2055884/100‑1      GAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCAGGCAATCGGTGCTGGCGGCCTGATGAGGCGTAAACGCCTTATCAGG                                                                                                       >  1:328725/1‑100       AAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGC                                                                                                      <  1:4204817/100‑1       AAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGC                                                                                                      <  1:96818/100‑1       AAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCAGCGTAAACGCCTTATCAGGC                                                                                                      <  1:438245/100‑1        AAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCC                                                                                                     <  2:534414/100‑1        AAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGGCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCC                                                                                                     <  1:3272091/100‑1         AAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATAAGGCGTTTACGCCGCATCAGGCCG                                                                                                    <  2:1765985/100‑1                                                                       CTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGG                                      >  2:2942793/1‑100                                                                          GCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTT                                   >  2:567092/1‑100                                                                           CGGCCTGATGCGGCGTAAACGCCTTATCAGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTT                                  >  1:527598/1‑100                                                                             tCCTGATGCGGCGTAAACGCCTTATCAGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGTCGCAAAAAACTATCCCATCAGCGGGTTCTT                                >  2:3301180/2‑100                                                                             GCCTGATGCGGCGTAAACGCCTTATCAGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTT                                >  2:402692/1‑100                                                                             GCCTGATGCGGCGTAAACGCCTTATCAGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTT                                 >  1:1876235/1‑99                                                                             GCCTGATGCGGCGTAAACGCCTTATCAGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCAGCAGCGGGTTT                                  >  1:3609600/1‑98                                                                                                    ATCAGGCCGCCAGCTCCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGAC         <  1:2909415/100‑1                                                                                                    ATCAGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGAC         <  1:529205/100‑1                                                                                                    ATCAGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGAC         <  2:3355643/100‑1                                                                                                    ATCAGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGAC         <  2:3733713/100‑1                                                                                                      CAGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACAC       >  2:4232030/1‑100                                                                                                      CAGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACAC       >  1:2160141/1‑100                                                                                                       AGGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACACA      >  2:1007412/1‑100                                                                                                        GGCCGCCAGCACCGATTGCCGGCTGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGATTTTCCCTTCCCGACGTAACATCTGCCACAG     >  1:702387/1‑100                                                                                                        GGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACACAG     >  2:1212158/1‑100                                                                                                        GGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACACAG     <  2:4093658/100‑1                                                                                                        GGCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACACAG     >  2:2139806/1‑100                                                                                                         GCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACACAGC    >  1:3702259/1‑100                                                                                                         GCCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACACAGC    >  2:2428528/1‑100                                                                                                          CCGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACACAGCG   >  1:1133952/1‑100                                                                                                           CGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACACAGCGC  <  2:4128786/100‑1                                                                                                           CGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACACAGCGC  <  2:2519818/100‑1                                                                                                                                                                                                                GAAGGGAAAAACCCGCTGATGGGATAGTTTTTTGCGCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1146037‑1145931 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggccGCCAGCACCGATTGCCGGATGCGACGTAACCACATCCGGCGCAAAAAACTATCCCATCAGCGGGTTTTTCCCTTCCCGACGTAACATCTGACACAGCGC  >  NC_000913/1145963‑1146061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.