New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1974949131 (0.850)23 (0.160) 11/166 NT 15.3% coding (376/1965 nt) cheA fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein
?NC_000913 = 1974961 132 (0.920)coding (364/1965 nt) cheA fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein

Only 100 of 201 total aligned reads displayed.

GCGACTGACTGCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGTTCTTGCATGATGTCCTTCGTTTC  >  NC_000913/1974850‑1975048
                                                                                                   |                                                                                                   
gcgACTGACTGCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAG                                                                                                     <  2:652693‑M1/100‑1 (MQ=255)
gcgACTGACTGCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAG                                                                                                     <  1:2652268‑M1/100‑1 (MQ=255)
 cgACTGACTGCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGt                                                                                                    <  2:1584012/100‑1 (MQ=255)
  gactgactGCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGCTGGCGTTTCGCCTTTCGCTTCTAATGCCAG                                                                                                     >  1:3329683‑M1/1‑98 (MQ=255)
  gactgactGCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGTCAGt                                                                                                    >  1:1753004/1‑99 (MQ=255)
  gactgactGCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGtt                                                                                                   <  1:420826/100‑1 (MQ=255)
   actgactgCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTg                                                                                                  <  2:4261555/100‑1 (MQ=255)
     tgactgCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGAc                                                                                                <  1:3981925/100‑1 (MQ=255)
     tgactgCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGAc                                                                                                >  1:3096377/1‑100 (MQ=255)
      gactgCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACg                                                                                               <  2:3352620/100‑1 (MQ=255)
       actgCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGc                                                                                              >  2:2290272/1‑100 (MQ=255)
        ctgCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCa                                                                                             >  2:3072888/1‑100 (MQ=255)
        ctgCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCa                                                                                             >  1:4227660/1‑100 (MQ=255)
         tgCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCaa                                                                                            >  1:3469044/1‑100 (MQ=255)
           cGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAgg                                                                                          >  2:565287/1‑100 (MQ=255)
                ctGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactgg                                                                                     <  2:1909275‑M1/100‑17 (MQ=255)
                ctGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactgg                                                                                     <  2:1909142‑M1/100‑17 (MQ=255)
                cgtcTCATCTTGCGGTTCACTTTTCGCAACCACACTTAATCGGGTCACTGCGCATGGCGATTCGCCATTCAATACTAATTCCAGTGGACACAAGACCtag                                                                                     <  1:1340607/97‑3 (MQ=255)
                   cTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcat                                                                                  <  2:4154640‑M1/100‑20 (MQ=255)
                   cTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGAGTCACTGCGTATGGCGTGTCGCCGGTCGCTTCTAATGCCAGTTGACGCAAGGCctggc                                                                                    >  1:2551560‑M2/1‑93 (MQ=255)
                    tCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcatt                                                                                 <  1:2493818‑M1/100‑21 (MQ=255)
                    tCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGa                                                                                 >  2:3812275/1‑100 (MQ=255)
                     cATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcatta                                                                                <  1:4218355‑M1/100‑22 (MQ=255)
                     cATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcatta                                                                                <  2:14591‑M1/100‑22 (MQ=255)
                     cATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGat                                                                                <  2:473397/100‑1 (MQ=255)
                     cATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGat                                                                                <  2:2930469/100‑1 (MQ=255)
                     cATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGat                                                                                >  1:3643671/1‑100 (MQ=255)
                      aTCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcattag                                                                               <  2:1575206‑M1/100‑23 (MQ=255)
                      aTCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGata                                                                               <  1:2138908/100‑1 (MQ=255)
                      aTCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGata                                                                               <  2:1054813/100‑1 (MQ=255)
                      aTCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGata                                                                               >  2:1204319/1‑100 (MQ=255)
                       tCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTACGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcattaga                                                                              <  2:2461684‑M1/100‑24 (MQ=255)
                        cTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACGGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGAtata                                                                             <  2:1041953/100‑1 (MQ=255)
                         ttGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcattagaag                                                                            <  2:1447221‑M1/100‑26 (MQ=255)
                         ttGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcattagaag                                                                            <  2:2105527‑M1/100‑26 (MQ=255)
                          tGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcattagaagn                                                                           <  1:2029725‑M1/100‑27 (MQ=255)
                          tGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcattagaagc                                                                           <  2:1155230‑M1/100‑27 (MQ=255)
                          tGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcattagaagc                                                                           <  2:844166‑M1/100‑27 (MQ=255)
                           gCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcattagaagcg                                                                          <  2:1128091‑M1/100‑28 (MQ=255)
                           gCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATc                                                                          <  1:1863618/100‑1 (MQ=255)
                            cGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCg                                                                         >  1:379343/1‑100 (MQ=255)
                              gTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGaa                                                                       >  2:2130379/1‑100 (MQ=255)
                               ttCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAg                                                                      <  2:845428/100‑1 (MQ=255)
                               ttCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAg                                                                      <  1:3541343/100‑1 (MQ=255)
                               ttCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCGTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAg                                                                      >  2:2049326/1‑100 (MQ=255)
                               ttCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTCTCGCCTTTCGCTTCTAATGCCAGgccttgcgtcaactggcattagaagcgaaag                                                                      <  1:172894‑M1/100‑32 (MQ=255)
                                tgaCTTTTGGCAACCACACTTAATGGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAg                                                                      <  1:4101538/97‑1 (MQ=255)
                                 cACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCt                                                                    <  1:1792229/100‑1 (MQ=255)
                                 cACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCt                                                                    >  1:2093168/1‑100 (MQ=255)
                                  aCTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCtn                                                                   <  1:2460077/100‑2 (MQ=255)
                                   cTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTg                                                                   >  2:3144518/1‑99 (MQ=255)
                                     tttGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTggcg                                                                <  1:2067992/100‑1 (MQ=255)
                                      ttGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTggcgg                                                               <  1:1015093/100‑1 (MQ=255)
                                      ttGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTggcgg                                                               >  1:3568619/1‑100 (MQ=255)
                                        ggCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCa                                                             >  2:3483783/1‑100 (MQ=255)
                                             ccACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATTATCGAAGCTGGCGGCATCCgg                                                        <  1:3714621/100‑1 (MQ=255)
                                             ccACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCgg                                                        >  2:3918157/1‑100 (MQ=255)
                                              cacaCTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGc                                                       <  2:71483/100‑1 (MQ=255)
                                              cacaCTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGc                                                       >  2:2313777/1‑100 (MQ=255)
                                              cacaCTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGc                                                       <  1:249811/100‑1 (MQ=255)
                                              cacaCTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGc                                                       <  2:1840746/100‑1 (MQ=255)
                                              cacaCTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGc                                                       <  1:596165/100‑1 (MQ=255)
                                                cacTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGctc                                                     >  2:285517/1‑100 (MQ=255)
                                                   ttAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTg                                                  >  1:4278019/1‑100 (MQ=255)
                                                    tAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGc                                                 <  1:1962963/100‑1 (MQ=255)
                                                       tCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGAc                                              <  1:282681/100‑1 (MQ=255)
                                                           gTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCGAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGt                                           >  1:3207061/1‑99 (MQ=255)
                                                            tCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGttt                                         >  2:3715236/1‑100 (MQ=255)
                                                              aCTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTtat                                       >  1:2227292/1‑100 (MQ=255)
                                                               cTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTtata                                      <  2:357262/100‑1 (MQ=255)
                                                               cTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTtata                                      <  1:966739/100‑1 (MQ=255)
                                                                    gATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGt                                 >  2:3930869/1‑100 (MQ=255)
                                                                        gCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAg                             >  1:797178/1‑100 (MQ=255)
                                                                         cGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGc                            <  1:1599553/100‑1 (MQ=255)
                                                                          gTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCt                           >  2:4222591/1‑100 (MQ=255)
                                                                           tttCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTg                          <  1:1773193/100‑1 (MQ=255)
                                                                            ttCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGt                         <  1:3726142/100‑1 (MQ=255)
                                                                               gCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCTGCACTTGCGACTGTTTATAAGCGTCGAGCTGTTCt                      >  1:1046957/1‑100 (MQ=255)
                                                                                 cTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGTTCTTg                    >  1:1514875/1‑100 (MQ=255)
                                                                                   ttCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGTTCTTGCa                  <  2:214050/100‑1 (MQ=255)
                                                                                    gatcttcTAATGCCAGTTGACGCAAGGCctggcattagaagcgaaaggcgaaacgccatccgcagtgacccgattaagtgtggttgccaaaagtgaaccg                 >  1:1621197‑M2/4‑28 (MQ=255)
                                                                                     cGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGTTCTTGCatg                <  2:2119317/100‑1 (MQ=255)
                                                                                     cGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGTTCTTGCatg                <  2:3954444/100‑1 (MQ=255)
                                                                                      gCTTCTAATGCCAGTTGACGCAAGGCctggcattagaagcgaaaggcgaaacgccatccgcagtgacccgattaagtgtggttgccaaaagtgaaccgca               <  1:3806610‑M2/100‑75 (MQ=255)
                                                                                      gCTTCTAATGCCAGTTGACGCAAGGCctggcattagaagcgaaaggcgaaacgccatccgcagtgacccgattaagtgtggttaccaaaagtgaaccgca               <  1:1635027‑M2/100‑75 (MQ=255)
                                                                                      gCTTCTAATGCCAGTTGACGCAAGGCATGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGTTCTTGCatga               >  2:2592470/1‑100 (MQ=255)
                                                                                       cTTCTAATGCCAGTTGACGCAAGGCctggcattagaagcgaaaggcgaaacgccatccgcagtgacccgattaagtgtggttgccaaaagtgaaccgcaa              <  2:1854720‑M2/100‑76 (MQ=255)
                                                                                       cTTCTAATGCCAGTTGACGCAAGGCctggcattagaagcgaaaggcgaaacgccatccgcagtgacccgattaagtgtggttgccaaaagtgaaccgcaa              <  1:800428‑M2/100‑76 (MQ=255)
                                                                                       cTTCTAATGCCAGTTGACGCAAGGCctggcattagaagcgaaaggcgaaacgccatccgcagtgacccgattaagtgtggttgccaaaagtgaaccgcaa              <  2:1287564‑M2/100‑76 (MQ=255)
                                                                                         tgtAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGTTCTTGCATGATGt            >  2:2895874/3‑100 (MQ=255)
                                                                                         tCTAATGCCAGTTGACGCAAGGCctggcattagaagcgaaaggcgaaacgccatccgcagtgacccgattaagtgtggttgccaaaagtgaaccgagatc            <  2:1621201‑M2/100‑78 (MQ=255)
                                                                                            aaTGCCAGTTGACGCAAGGCctggcattagaagcgaaaggcgaaacgccatccgcagtgacccgattaagtgtggttgccaaaagtgaaccgcaagatga         <  2:215729‑M2/100‑81 (MQ=255)
                                                                                            aaTGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGTTCTTGCATGATGTCCt         <  2:321472/100‑1 (MQ=255)
                                                                                              tGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGTTCTTGCATGATGTCCTTc       >  2:3417329/1‑100 (MQ=255)
                                                                                              tGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGTTCTTGCATGATGTCCTTc       >  2:2612200/1‑100 (MQ=255)
                                                                                               gCCAGgccttgcgtcaactggcattagaagcgaaaggcgaaacgccatccgcagtgacccgattaagtgtggttgccaaaagtgaaccgcaagatgagca      >  1:1704661‑M1/1‑5 (MQ=255)
                                                                                               gCCAGgccttgcgtcaactggcattagaagcgaaaggcgaaacgccatccgcagtgacccgattaagtgtggttgccaaaagtgaaccgcaagatgagca      <  2:3060399‑M1/100‑96 (MQ=255)
                                                                                               gCCAGgccttgcgtcaactggcattagaagcgaaaggcgaaacgccatccgcagtgacccgattaagtgtggttgccaaaagtgaaccgcaagatgagca      <  1:1170227‑M1/100‑96 (MQ=255)
                                                                                               gCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGTTCTTGCATGATGTCCTTCg      >  1:3815776/1‑100 (MQ=255)
                                                                                                   ggccttgcgtcaactggcattagaagcgaaaggcgaaacgccatccgcagtgacccgattaagtgtggttgccaaaagtgaaccgcaagatgagcagagt  >  1:4194435‑M1/1‑1 (MQ=255)
                                                                                                   |                                                                                                   
GCGACTGACTGCGACTCTGCTCATCTTGCGGTTCACTTTTGGCAACCACACTTAATCGGGTCACTGCGGATGGCGTTTCGCCTTTCGCTTCTAATGCCAGTTGACGCAAGGCCTGGCAGATATAATCGAAGCTGGCGGCATCCGGCTCTTGCGACTGTTTATAAGCGTCGAGCTGTTCTTGCATGATGTCCTTCGTTTC  >  NC_000913/1974850‑1975048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.