New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2139701NA (NA)12 (0.080) 7/164 NT NA intergenic (+216/+58) yegH/asmA inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein
?NC_000913 = 2139734 NA (NA)noncoding (33/37 nt) REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 159 total aligned reads displayed.

CGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACG  >  NC_000913/2139603‑2139800
                                                                                                  |                                                                                                   
cGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACg                                                                                                    >  2:2657068‑M1/1‑99 (MQ=255)
 gTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgc                                                                                                   >  1:3193208‑M1/1‑98 (MQ=255)
 gTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACg                                                                                                    <  1:2539140‑M1/99‑2 (MQ=255)
   tCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgcct                                                                                                 <  1:2386007‑M1/100‑5 (MQ=255)
   tCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgcct                                                                                                 <  1:948417‑M1/100‑5 (MQ=255)
    cACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgcctg                                                                                                >  2:563254‑M1/1‑95 (MQ=255)
     aCCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGCACGGCACAGCCTTCGGTCTTACATATTCAGAATATAATGATGCCGCCACGAACgcctga                                                                                               >  1:1743655‑M1/1‑94 (MQ=255)
     aCCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgcctga                                                                                               >  1:1797947‑M1/1‑94 (MQ=255)
      ccGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgcctgat                                                                                              >  2:3802941‑M1/1‑93 (MQ=255)
      ccGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgcctgat                                                                                              <  2:3334245‑M1/100‑8 (MQ=255)
        ggCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGc                                                                                            <  1:4127726/100‑1 (MQ=255)
           ttGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGAc                                                                                         <  1:2078026/100‑1 (MQ=255)
           ttGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGAc                                                                                         <  1:3074988/100‑1 (MQ=255)
            tGAGCATTCCATAGTAGCAAGGAACATCAAGGGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGAc                                                                                         <  1:1576054/99‑1 (MQ=255)
             naGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGc                                                                                       >  1:468182/2‑100 (MQ=255)
              aGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCt                                                                                      <  2:3295123/100‑1 (MQ=255)
              aGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCt                                                                                      <  2:2786946/100‑1 (MQ=255)
                cGTTCCATAGTAGCGAGGAACATCAAGTTAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCttt                                                                                    <  2:867333/100‑1 (MQ=255)
                  ttCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTAc                                                                                  >  2:427239/1‑100 (MQ=255)
                   tCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGTCACGAACGCCTGATGCGACGCTTTAcg                                                                                 <  1:1877090/100‑1 (MQ=255)
                     cATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTAcgcg                                                                               >  2:1346696/1‑100 (MQ=255)
                      aTAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATCTAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGt                                                                              >  1:3940056/1‑100 (MQ=255)
                       tagtagCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTc                                                                             <  1:3038739/100‑1 (MQ=255)
                          tAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTA                                                                          <  1:920015‑M2/100‑1 (MQ=255)
                           aGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTAT                                                                         <  1:1125874‑M2/100‑1 (MQ=255)
                            gCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgcctgatgcgacgcgtaaagcgtcgcatc                                                                        <  2:1853719‑M1/100‑30 (MQ=255)
                             cGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCA                                                                       <  1:3740694‑M2/100‑1 (MQ=255)
                             cGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCA                                                                       <  2:4078129‑M2/100‑1 (MQ=255)
                              gAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAG                                                                      >  2:3107999‑M2/1‑100 (MQ=255)
                               agtaacatCAAGTGAACGGAACAGCCTTCGATTTTACATATTCAGAATATAACGATGCCGCCACGAACgcctgataagacgcgtaaagcgtcgcatcagg                                                                     <  1:1381922‑M1/97‑33 (MQ=255)
                               aGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGG                                                                     >  1:1584013‑M2/1‑100 (MQ=255)
                                ggAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgcctgataagacgcgtaaagcgtcgcatcaggc                                                                    <  2:1110957‑M1/100‑34 (MQ=255)
                                ggAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgcctgataagacgcgtaaagcgtcgcatcaggc                                                                    <  1:100758‑M1/100‑34 (MQ=255)
                                ggAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGC                                                                    <  1:4160805‑M2/100‑1 (MQ=255)
                                ggAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGC                                                                    >  2:2731786‑M2/1‑100 (MQ=255)
                                ggAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGC                                                                    >  1:403279‑M2/1‑100 (MQ=255)
                                ggAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGC                                                                    <  2:1423861‑M2/100‑1 (MQ=255)
                                 gAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGcc                                                                   <  1:2518519/100‑1 (MQ=255)
                                 gAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGcc                                                                   <  2:1674407/100‑1 (MQ=255)
                                 gAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCA                                                                       >  1:3145976‑M2/1‑96 (MQ=255)
                                  aaCATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgcctgataagacgcgtaaagcgtcgcatcaggcgt                                                                  <  1:1093068‑M1/100‑36 (MQ=255)
                                   aCATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgcctgataagacgcgtaaagcgtcgcatcaggcgtt                                                                 <  2:2898797‑M1/100‑37 (MQ=255)
                                     aTCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACa                                                               <  2:3991270/100‑1 (MQ=255)
                                     aTCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACa                                                               >  2:970950/1‑100 (MQ=255)
                                     aTCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACa                                                               <  1:1610963/100‑1 (MQ=255)
                                     aTCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACa                                                               >  1:2723606/1‑100 (MQ=255)
                                     aTCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACa                                                               >  2:704887/1‑100 (MQ=255)
                                      tCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACgcctgataagacgcgtaaagcgtcgcatcaggcgttcgt                                                              <  2:4048966‑M1/100‑40 (MQ=255)
                                      tCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACa                                                               >  1:3410163/1‑99 (MQ=255)
                                      tCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTAATGCGACGCTTTACGCGTCTTATCAGGCCTACa                                                               >  1:883497/1‑99 (MQ=255)
                                       cAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAgg                                                             <  2:37359/100‑1 (MQ=255)
                                       cAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAgg                                                             <  1:742572/100‑1 (MQ=255)
                                         aGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCATGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGAc                                                           <  1:2364695/100‑1 (MQ=255)
                                          gTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACt                                                          <  1:2180091/100‑1 (MQ=255)
                                          gTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACt                                                          <  2:3408496/100‑1 (MQ=255)
                                            gAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTgg                                                        >  2:3801275/1‑100 (MQ=255)
                                            gAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTgg                                                        <  1:3794709/100‑1 (MQ=255)
                                             agcGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTgg                                                        <  2:786107/97‑1 (MQ=255)
                                                 gAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCAcc                                                   >  1:2070809/1‑100 (MQ=255)
                                                   aCAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTg                                                 <  2:3055475/100‑1 (MQ=255)
                                                   aCAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTg                                                 <  1:1308630/100‑1 (MQ=255)
                                                    cAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGTACTGGTCACCTgg                                                <  2:2905939/100‑1 (MQ=255)
                                                     aGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGt                                               <  2:959849/100‑1 (MQ=255)
                                                      gCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTa                                              <  2:2723616/100‑1 (MQ=255)
                                                        cTTGGATCTTAGATATTGAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTa                                              <  1:1157070/98‑1 (MQ=255)
                                                                ttACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACAtct                                    >  2:2365587/1‑100 (MQ=255)
                                                                 tACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACAtctt                                   <  1:1519116/100‑1 (MQ=255)
                                                                   cATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACAtcttct                                 <  1:771019/100‑1 (MQ=255)
                                                                   cATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACAtcttct                                 >  1:2432215/1‑100 (MQ=255)
                                                                     tatTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTcc                               >  2:3460829/1‑100 (MQ=255)
                                                                     tatTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTcc                               <  2:1233607/100‑1 (MQ=255)
                                                                     tatTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTcc                               <  1:4197387/100‑1 (MQ=255)
                                                                     tatTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTcc                               >  1:162133/1‑100 (MQ=255)
                                                                      atTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCa                              >  2:2140233/1‑100 (MQ=255)
                                                                       ttCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAg                             >  1:3304210/1‑100 (MQ=255)
                                                                       ttCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAg                             <  1:3653387/100‑1 (MQ=255)
                                                                       ttCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAg                             >  2:3704330/1‑100 (MQ=255)
                                                                         cAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCa                           >  1:137664/1‑100 (MQ=255)
                                                                         cAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCa                           >  2:3455033/1‑100 (MQ=255)
                                                                         cAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCa                           >  1:3717847/1‑100 (MQ=255)
                                                                          aGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCaa                          <  2:1284836/100‑1 (MQ=255)
                                                                            aaTATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAAct                        <  2:592127/100‑1 (MQ=255)
                                                                            aaTATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAAct                        <  1:2656300/100‑1 (MQ=255)
                                                                             atatAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAActt                       >  1:1026631/1‑100 (MQ=255)
                                                                             atatAATGATGCCGCCACGAACGCCTGATACGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGCTCACCTGGTAACCTACATCTTCTCCAGCAActt                       <  1:2568130/100‑1 (MQ=255)
                                                                                 aaTGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACttcttc                   <  2:1908381/100‑1 (MQ=255)
                                                                                   tgatgCCGCCACGAACGCCTGATGCGTCGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTcac                 <  2:376050/100‑1 (MQ=255)
                                                                                       gccgccACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCt             >  1:662838/1‑100 (MQ=255)
                                                                                        ccgccACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCtt            >  2:2402733/1‑100 (MQ=255)
                                                                                          gccACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCgttcgtggcggcatcattctattctgaatatgtaagatcgaaggctgttccgttcact          <  2:3939022‑M2/100‑59 (MQ=255)
                                                                                          gccACGAACGCCTGAGGCGACGCTTGACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCtt            <  1:4043726/98‑1 (MQ=255)
                                                                                           ccACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGc         <  2:3666743/100‑1 (MQ=255)
                                                                                            cACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGcc        <  2:3170513/100‑1 (MQ=255)
                                                                                            cACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGcc        <  2:965361/100‑1 (MQ=255)
                                                                                            cACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGc         >  2:1059055/1‑99 (MQ=255)
                                                                                             aCGAACGCCTTATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCa       <  1:2808915/100‑1 (MQ=255)
                                                                                               naacGCCTGATGCGACGCTTTACGCGTCTTATCAGGCgttcgtggcggcatcattatattctgaatatgtaagatcgaaggctgttccgttcacttgatg     <  1:3436598‑M2/99‑64 (MQ=255)
                                                                                               gAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCAtt     >  2:2622286/1‑100 (MQ=255)
                                                                                                 aCGCCTGATGCGACGCTTTACGCGTCTTATCAGGCgttcgtggcggcatcattatattctgaatatgtaagatcgaaggctgttccgttcacttgatgtt   <  1:3320747‑M2/100‑66 (MQ=255)
                                                                                                 aCGCCTGATGCGACGCTTTACGCGTCTTATCAGGCgttcgtggcggcatcattatattctgaatatgtaagatcgaaggctgttccgttcacttgatgtt   <  1:1093068‑M2/100‑66 (MQ=255)
                                                                                                  |                                                                                                   
CGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACG  >  NC_000913/2139603‑2139800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.