New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729439	4 (0.030)	10 (0.070)	8/168	NT	72.6%	noncoding (6/76 nt)	gltW	tRNA‑Glu
	?	NC_000913	3943424 =	NA (NA)					intergenic (+75/‑11)	rrsC/gltU	16S ribosomal RNA of rrnC operon/tRNA‑Glu

TCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACT  >  NC_000913/2729340‑2729538                                                                                                    |                                                                                                    tCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAG                                                                                                     >  2:3673432‑M1/1‑100 (MQ=255) tCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAG                                                                                                     >  1:3933021‑M1/1‑100 (MQ=255) tCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAG                                                                                                     <  2:2783250‑M1/100‑1 (MQ=255) tCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAG                                                                                                     <  1:2522641‑M1/100‑1 (MQ=255)  cGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAG                                                                                                     <  1:3284204‑M1/99‑1 (MQ=255)                   aagccAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCtt                                                                                   <  1:3976999/97‑1 (MQ=1)                       cAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGcagactgatacgtccccttcgt                                                                               <  1:2156414‑M1/100‑23 (MQ=255)                       cAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGcagactgatacgtccccttcgt                                                                               <  1:1813669‑M1/100‑23 (MQ=255)                         gCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGcagactgatacgtccccttcgtct                                                                             <  2:2634996‑M1/100‑25 (MQ=255)                         gCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGcagactgatacgtccccttcgtct                                                                             <  1:3204639‑M1/100‑25 (MQ=255)                          cAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGcagactgatacgtccccttcgtcta                                                                            <  1:537929‑M1/100‑26 (MQ=255)                           aaGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGcagactgatacgtccccttcgtctag                                                                           <  1:1678266‑M1/100‑27 (MQ=255)                            aGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGcagactgatacgtccccttcgtctaga                                                                          <  2:276784‑M1/100‑28 (MQ=255)                               ggCGTCCCCTAGGGGATTCGACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGAGCCTCTAGACGAAGcagactgatacgtccccttcgtctagaggc                                                                       <  2:3043907‑M1/100‑31 (MQ=255)                                    ccccTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCGTCTTG‑CGAAGcagactgatacgtccccttcgtctagaggcccagga                                                                 <  1:2597770‑M1/100‑37 (MQ=255)                                      ccTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCGTCTTG‑CGAAGcagactgatacgtccccttcgtctagaggcccaggaca                                                               <  2:1113775‑M1/100‑39 (MQ=255)                                        tAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataagc                                                              <  2:1477672/100‑4 (MQ=1)                                                                 ccctGAAAGGGCCGTGTCCTGGGCCTCTAGACGAAGGAGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAAt                                     <  1:2795034/97‑1 (MQ=0)                                                                   gttaaaGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATa                                    <  1:1114752/96‑1 (MQ=1)                                                                                                cGAAGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctgg      <  1:3096490‑M1/100‑96 (MQ=255)                                                                                                cGAAGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctgg      >  2:1519238‑M1/1‑5 (MQ=255)                                                                                                cGAAGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctgg      >  2:2099022‑M1/1‑5 (MQ=255)                                                                                                cGAAGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctgg      <  2:4246028‑M1/100‑96 (MQ=255)                                                                                                cGAAGcagactgatacctccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctgg      <  1:2493072‑M1/100‑96 (MQ=255)                                                                                                 gAAGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggt     <  2:4173042‑M1/100‑97 (MQ=255)                                                                                                 gAAGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctgg      >  2:2585198‑M1/1‑4 (MQ=255)                                                                                                  aaGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtt    >  2:1733230‑M1/1‑3 (MQ=255)                                                                                                  aaGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtt    <  2:3096032‑M1/100‑98 (MQ=255)                                                                                                   aGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggttt   <  2:814178‑M1/100‑99 (MQ=255)                                                                                                   aGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggttt   >  2:153815‑M1/1‑2 (MQ=255)                                                                                                   aGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggttt   >  2:2162309‑M1/1‑2 (MQ=255)                                                                                                   aGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggttt   <  1:1908054‑M1/100‑99 (MQ=255)                                                                                                   aGcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggttt   <  2:3659226‑M1/100‑99 (MQ=255)                                                                                                   aGcagactgatacgtccccttcgtctagaggcccagaacacctccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggttt   <  2:4076070‑M1/100‑99 (MQ=255)                                                                                                    gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaaccggggttcgaatcccctaggggacgccacttgctggtttg  >  1:377671‑M1/1‑1 (MQ=255)                                                                                                    gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg  <  1:1312645‑M1/100‑100 (MQ=255)                                                                                                    gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg  <  1:1070427‑M1/100‑100 (MQ=255)                                                                                                    gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg  <  1:150408‑M1/100‑100 (MQ=255)                                                                                                    gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg  <  1:2193085‑M1/100‑100 (MQ=255)                                                                                                    gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg  >  2:2491275‑M1/1‑1 (MQ=255)                                                                                                    gcagactgatacgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttg  >  1:53550‑M1/1‑1 (MQ=255)                                                                                                    |                                                                                                    TCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACT  >  NC_000913/2729340‑2729538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.