| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3943543 | NA (NA) | 13 (0.100) | 6/156 | NT | 100% | intergenic (+33/‑161) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943583 | 0 (0.000) | intergenic (+73/‑121) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
GGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTG > NC_000913/3943474‑3943639 | ggcggTAACAGGGG‑TTCGAATGCCCTAGGGGCCGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGT < 1:1619075‑M2/100‑1 (MQ=255)ggcggTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTAATCTTCGGGTGATGT < 1:2060054‑M2/100‑1 (MQ=255) gcggTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTT > 2:2941469‑M2/1‑100 (MQ=255) cggTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTT < 1:4143200‑M2/100‑1 (MQ=255) ggTAACAGGGG‑TTCGTATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTG > 2:4203555‑M2/1‑100 (MQ=255) ggTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTG > 2:4228070‑M2/1‑100 (MQ=255) gTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGA > 1:2017987‑M2/1‑100 (MQ=255) gTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGA < 1:1277715‑M2/100‑1 (MQ=255) gTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGA < 2:3435522‑M2/100‑1 (MQ=255) gTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGA > 1:3108273‑M2/1‑100 (MQ=255) tAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCATCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG > 1:2019846‑M2/1‑100 (MQ=255) tAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG < 2:275656‑M2/100‑1 (MQ=255) tAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG > 2:1107042‑M2/1‑100 (MQ=255) ccctaggggaTTCGAA‑CCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG < 2:53528‑M2/96‑1 (MQ=255) aCAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGAT < 2:3361623‑M2/100‑1 (MQ=255) aCAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGAT < 2:3110090‑M2/100‑1 (MQ=255) aCAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGAT > 2:866880‑M2/1‑100 (MQ=255) aCAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGAT < 1:1959859‑M2/100‑1 (MQ=255) cAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA < 2:568403‑M2/100‑1 (MQ=255) cAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA < 1:1457718‑M2/100‑1 (MQ=255) cAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA > 1:2921533‑M2/1‑100 (MQ=255) gggg‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAATGTCACCTGCCTTAATATCTAAAAACTCATCTTCGGGTGATGTTTGAGATATT < 1:3040115‑M2/100‑1 (MQ=255) gggg‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT < 1:1033534‑M2/100‑1 (MQ=255) gggg‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT > 2:3616295‑M2/1‑100 (MQ=255) gggg‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT < 2:3693651‑M2/100‑1 (MQ=255) gggg‑TTCGAATCCCCTAGGGAACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT < 1:2616329‑M2/100‑1 (MQ=255) gtgagtgaAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcg < 2:1934358‑M2/100‑39 (MQ=255) gccgaccttaatATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggat < 2:3894593‑M2/95‑52 (MQ=255) ccTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggatt < 1:223413‑M2/100‑53 (MQ=255) gaccttAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggatt < 1:522033‑M2/96‑53 (MQ=255) gCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcga < 1:3254938‑M2/100‑56 (MQ=255) acctTAATATCTCAAAACTCATCTTCGGGTGATGTTTAAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcga < 1:2272664‑M2/99‑56 (MQ=255) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaa < 1:3276726‑M2/100‑57 (MQ=255) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaa < 1:1187272‑M2/100‑57 (MQ=255) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaa < 1:927716‑M2/100‑57 (MQ=255) | GGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTG > NC_000913/3943474‑3943639 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |