New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3281702 =NA (NA)10 (0.070) 6/164 NT NA noncoding (1/82 nt) REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3281734 = NA (NA)noncoding (33/82 nt) REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 179 total aligned reads displayed.

CCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTT  >  NC_000913/3281635‑3281833
                                                                                                   |                                                                                                   
ccTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGGTCTGTGCAGCGGTGTCGGATGCGCCGCTAACGCGTCTTATCCGAcc                                                                                                     >  2:1945794/1‑100 (MQ=255)
ccTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGAcc                                                                                                     >  2:1731775/1‑100 (MQ=255)
ccTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGAcc                                                                                                     <  1:526301/100‑1 (MQ=255)
   ttATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTAc                                                                                                  <  2:3202379/100‑1 (MQ=255)
   ttATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTAc                                                                                                  <  1:2997068/100‑1 (MQ=255)
    tATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACa                                                                                                 >  2:3415950/1‑100 (MQ=255)
       tGGGCCTTCACTTCCCCCGTAAGGCCTTTATTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGtt                                                                                              >  1:652901/1‑100 (MQ=255)
        gggCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTg                                                                                             <  2:1421476/100‑1 (MQ=255)
          gCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGt                                                                                           <  1:1201478/100‑1 (MQ=255)
          gCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGt                                                                                           <  2:1205247/100‑1 (MQ=255)
          gCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGt                                                                                           >  2:3266128/1‑100 (MQ=255)
           ccTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACCGt                                                                                               >  2:3888799/1‑95 (MQ=255)
           ccTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTg                                                                                          >  2:1791638/1‑100 (MQ=255)
            cTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGa                                                                                         <  1:1928069/100‑1 (MQ=255)
               cACTTCCCCCGTAAGGCCTTTCTTTTGCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCg                                                                                      <  1:3219205/100‑1 (MQ=255)
                aCTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGc                                                                                     <  2:2861993/100‑1 (MQ=255)
                aCTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGc                                                                                     >  1:1745257/1‑100 (MQ=255)
                     ccccGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCTTCTTATCCGAACTACAGTTGGTGACCGCAAg                                                                                  >  1:1497083/1‑98 (MQ=255)
                     ccccGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGc                                                                                <  1:3053981/100‑1 (MQ=255)
                      cccGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGcc                                                                               >  1:4210804/1‑100 (MQ=255)
                         gTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGa                                                                            <  1:97885/100‑1 (MQ=255)
                         gTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGa                                                                            <  1:3449744/100‑1 (MQ=255)
                          tgaGGCCTTTCTTTTTCTTTTGTTTGGGGCTCTGGAGCGGTGTCGGAGGCGACGCTAACGCGTCTTTTCCGACTTAGAGTTGGTGTCCGCAAGGCCg                                                                              <  1:2246122/95‑1 (MQ=255)
                             ggCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATaaa                                                                        >  2:1385705/1‑100 (MQ=255)
                             ggCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATaaa                                                                        >  1:3269030/1‑100 (MQ=255)
                               ccTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTTCAGTTGGTGACCGCAAGGCCGGATAAAg                                                                       <  1:2254942/99‑1 (MQ=255)
                                ctttctttTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCg                                                                     <  1:417168/100‑1 (MQ=255)
                                  ttctttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGtt                                                                   <  2:510616/100‑1 (MQ=255)
                                  ttctttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGtt                                                                   <  2:249248/100‑1 (MQ=255)
                                   tctttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGttt                                                                  <  2:1602340/100‑1 (MQ=255)
                                   tctttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGttt                                                                  <  2:1327778/100‑1 (MQ=255)
                                    ctttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTg                                                                 >  2:2014113/1‑100 (MQ=255)
                                     tttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTCGGTGACCGCAAGGCCGGATAAAGCGTTTgc                                                                >  2:314466/1‑100 (MQ=255)
                                      ttttctttCGTTTTGATCTTTGCAGCGGTGTCGTATGCGACGCTAACGCGTCTTATCCGACCTACCGTTCGTGACCGCAAGGCCGGATAAACGGTTTccg                                                               >  1:2039109/1‑100 (MQ=37)
                                       ccgatctcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTgcgc                                                              <  1:3892069/94‑1 (MQ=255)
                                        ttctttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGcgcc                                                             <  1:3316778/100‑1 (MQ=255)
                                          ctttcGTTTTGATCTGTGCAGCGGTGGCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGcgccgc                                                           >  2:2593633/1‑100 (MQ=255)
                                           tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCa                                                          <  1:3636794/100‑1 (MQ=255)
                                           tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCa                                                          <  2:1973137/100‑1 (MQ=255)
                                           tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCa                                                          <  2:3459399/100‑1 (MQ=255)
                                           tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCa                                                          <  2:3524569/100‑1 (MQ=255)
                                            ttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCAt                                                         >  2:3313148/1‑100 (MQ=255)
                                              cGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTgcgcagatcgg                                                       >  2:3892087/1‑93 (MQ=255)
                                               gTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCa                                                      >  2:1844911/1‑100 (MQ=255)
                                                ttttGATCTGTGCAGCGGTGTGGGATGCGACGCTAGCGCGTCGTATCCGGCCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAg                                                     <  1:3701542/100‑1 (MQ=39)
                                                ttttGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAg                                                     <  2:380075/100‑1 (MQ=255)
                                                ttttGATCTGTGCAGCGGTGTCGGATGCGACGCGAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAg                                                     <  2:4158814/100‑1 (MQ=255)
                                                 tttGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGGCCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCACCCAGc                                                    <  1:3525079/100‑1 (MQ=255)
                                                 tttGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGc                                                    <  2:3269042/100‑1 (MQ=255)
                                                 tttGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGGCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAg                                                     <  1:1405024/99‑1 (MQ=255)
                                                    gATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAAt                                                 >  2:1314844/1‑100 (MQ=255)
                                                         gtgCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCtt                                            >  2:262454/1‑100 (MQ=255)
                                                          tgCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCttt                                           <  1:876510/100‑1 (MQ=255)
                                                           gCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCtttt                                          <  2:507872/100‑1 (MQ=255)
                                                            cAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTg                                         <  2:3025941/100‑1 (MQ=255)
                                                             aGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGc                                        >  1:3183726/1‑100 (MQ=255)
                                                                 gtgtCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTcc                                    <  2:3121566/100‑1 (MQ=255)
                                                                 aggtcggataagacgcgttagcgtcgcatccgacCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTcc                                    >  2:2293588‑M2/35‑100 (MQ=255)
                                                                  tgtCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCt                                   <  1:2147225/100‑1 (MQ=255)
                                                                  ggtcggataagacgcgttagcgtcgcatccgacCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCt                                   >  2:1629263‑M2/34‑100 (MQ=255)
                                                                  ggtcggataagacgcgttagcgtcgcatccgacCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCt                                   >  1:2054541‑M2/34‑100 (MQ=255)
                                                                  ggtcggataagacgcgttagcgtcgcatccgacCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCt                                   >  1:1545867‑M2/34‑100 (MQ=255)
                                                                   gtcggataagacgcgttagcgtcgcatccgacCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCtt                                  >  1:2854194‑M2/33‑100 (MQ=255)
                                                                   GTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCtt                                  <  1:3524024‑M1/100‑1 (MQ=255)
                                                                    TCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCttt                                 <  2:734861‑M1/100‑1 (MQ=255)
                                                                     CGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTa                                <  2:159376‑M1/100‑1 (MQ=255)
                                                                      ggataagacgcgttagcgtcgcatccgacCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAt                               >  1:1812281‑M2/30‑100 (MQ=255)
                                                                      GGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAt                               <  2:799738‑M1/100‑1 (MQ=255)
                                                                       GATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATc                              >  1:475810‑M1/1‑100 (MQ=255)
                                                                       GATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATc                              <  1:928802‑M1/100‑1 (MQ=255)
                                                                         TGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCtt                            <  2:3212416‑M1/100‑1 (MQ=255)
                                                                          gCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtcttt                           <  1:1013481/100‑1 (MQ=255)
                                                                           cGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtctttt                          >  2:1812690/1‑100 (MQ=255)
                                                                           cGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtctttt                          >  1:4269346/1‑100 (MQ=255)
                                                                            gACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtcttttc                         <  2:3278576/100‑1 (MQ=255)
                                                                             aCGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtcttttct                        <  2:2942887/100‑1 (MQ=255)
                                                                             aCGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtcttttct                        <  1:2521081/100‑1 (MQ=255)
                                                                              cgcgAACGCGTCTTATCCGCCCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtctttt                          <  1:1506820/97‑1 (MQ=255)
                                                                               gCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtcttttcttt                      <  1:769561/100‑1 (MQ=255)
                                                                                cgttagcgtcgcatccgacCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTtttctttc                     >  2:86201‑M2/20‑100 (MQ=255)
                                                                                cTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTtttctttc                     >  1:2944145/1‑100 (MQ=255)
                                                                                cTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTtttctttc                     >  2:3905187/1‑100 (MQ=255)
                                                                                 tAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCa                    <  2:273925/100‑1 (MQ=255)
                                                                                 tAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCa                    >  1:2387596/1‑100 (MQ=255)
                                                                                  aaCGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCaa                   <  1:1062712/100‑1 (MQ=255)
                                                                                  aaCGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCaa                   >  2:3670555/1‑100 (MQ=255)
                                                                                   aCGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAAc                  <  1:1948903/100‑1 (MQ=255)
                                                                                    cgcgTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACg                 >  2:2224618/1‑100 (MQ=255)
                                                                                     gcgTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGa                <  1:594881/100‑1 (MQ=255)
                                                                                       gTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATc              <  2:1877197/100‑1 (MQ=255)
                                                                                       gTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTCTCTTTCAACGATc              <  2:2870628/100‑1 (MQ=255)
                                                                                        tCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATca             <  2:3546786/100‑1 (MQ=255)
                                                                                          ttATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATcaca           <  2:289300/100‑1 (MQ=255)
                                                                                           tATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACaa          >  2:2268473/1‑100 (MQ=255)
                                                                                             tccgacCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAAt        >  2:2401416‑M2/7‑100 (MQ=255)
                                                                                                gacCTACGGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTc     >  1:384204‑M2/4‑100 (MQ=255)
                                                                                                gacCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGGTCACAAATTTc     <  1:2232819‑M2/97‑1 (MQ=255)
                                                                                                gacCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTc     >  2:145195‑M2/4‑100 (MQ=255)
                                                                                                 acCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCg    <  2:3982222‑M2/98‑1 (MQ=255)
                                                                                                   cTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGtt  >  1:396270/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTT  >  NC_000913/3281635‑3281833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.