New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3423749 =10 (0.070)5 (0.040) 4/164 NT 35.2% noncoding (39/120 nt) rrfD 5S ribosomal RNA of rrnD operon
?NC_000913 = 4040597 NA (NA)noncoding (81/120 nt) rrfA 5S ribosomal RNA of rrnA operon

Only 100 of 151 total aligned reads displayed.

ACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCG  >  NC_000913/4040509‑4040696
                                                                                        |                                                                                                   
aCAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTctcct                                                                                          <  2:777686/100‑1 (MQ=11)
 cAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTctcctc                                                                                         <  2:950315/100‑1 (MQ=31)
  aggaTTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCa                                                                                        <  2:1646966/97‑1 (MQ=17)
   gAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCAt                                                                                       <  2:1242169/100‑1 (MQ=32)
   gAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCAt                                                                                       >  2:2174173/1‑100 (MQ=33)
   gAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCAt                                                                                       >  2:1570198/1‑100 (MQ=33)
    aaTTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCAtn                                                                                      <  1:4081761/100‑2 (MQ=17)
     aTTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGc                                                                                     >  2:907569/1‑100 (MQ=33)
     aTTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGc                                                                                     >  1:1780055/1‑100 (MQ=33)
      tttGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCg                                                                                    <  2:584843/100‑1 (MQ=33)
          ccTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGagag                                                                                <  1:3234736/100‑1 (MQ=32)
          ccTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGagag                                                                                <  2:1979561/100‑1 (MQ=33)
          ccTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGagag                                                                                <  1:3151737/100‑1 (MQ=33)
          ccTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGagag                                                                                <  1:3118787/100‑1 (MQ=33)
           cTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGt                                                                               <  1:3529181/100‑1 (MQ=33)
           cTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGt                                                                               >  1:4205136/1‑100 (MQ=32)
           cTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGt                                                                               <  2:3118214/100‑1 (MQ=33)
            tGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTa                                                                              >  2:3289296/1‑100 (MQ=33)
              gcggcAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAgg                                                                            <  1:2468359/100‑1 (MQ=33)
               cagcAGTAGCGCGGTGGTCTCACCTGACCCCATGTCGAACTTAGGAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAggg                                                                           <  1:1185632/98‑1 (MQ=11)
                 gcAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGaa                                                                         <  1:296483/100‑1 (MQ=33)
                    gTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTg                                                                      >  2:3362122/1‑100 (MQ=33)
                    gTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTATCCTCATGCGAGAGTAGGGAACTg                                                                      >  1:1062489/1‑100 (MQ=17)
                     tAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTg                                                                      >  2:3492230/1‑99 (MQ=33)
                       gcgcGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCa                                                                   >  2:2228389/1‑100 (MQ=33)
                       gcgcGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCa                                                                   <  1:3197011/100‑1 (MQ=33)
                        cgcgGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAg                                                                  <  1:4093929/100‑1 (MQ=33)
                          cgGTGGTCCCACCTGACCCCATGCCGAACTCACAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAgg                                                                 >  2:4060629/1‑99 (MQ=18)
                           ggtggtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCa                                                               <  2:3257595/100‑1 (MQ=33)
                            gtggtCCCACCTGACCCCATGCCGCACTCAGACGTGAAACGCCGTAGCGCCGAAGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCAt                                                              >  2:1957806/1‑100 (MQ=255)
                            gtggtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCAt                                                              <  2:4253327/100‑1 (MQ=33)
                            gtggtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCAt                                                              >  2:2415321/1‑100 (MQ=33)
                             tggtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATc                                                             <  2:1780059/100‑1 (MQ=33)
                              ggtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCa                                                            >  2:578890/1‑100 (MQ=33)
                                tCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGACCTGCCAGGCATCaaa                                                          >  2:4205134/1‑100 (MQ=18)
                                 cccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAAt                                                         >  2:1894230/1‑100 (MQ=33)
                                 cccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAAt                                                         <  1:440712/100‑1 (MQ=33)
                                  ccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATa                                                        >  2:2510859/1‑100 (MQ=33)
                                   cACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATaa                                                       <  2:2705258/100‑1 (MQ=33)
                                    aCCTGACTCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCTTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATaaa                                                      <  1:2291820/100‑1 (MQ=12)
                                      cTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAc                                                    <  1:2689795/100‑1 (MQ=33)
                                      cTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAc                                                    <  1:37502/100‑1 (MQ=32)
                                         aCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGaa                                                 >  2:4025660/1‑100 (MQ=33)
                                           cccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAg                                               <  1:442538/100‑1 (MQ=33)
                                           cccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAg                                               >  1:3715379/1‑100 (MQ=33)
                                            ccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAgg                                              >  2:2043852/1‑100 (MQ=33)
                                            ccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGCGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAACCGAAAg                                               >  1:1889485/1‑99 (MQ=12)
                                             cATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGc                                             <  1:1435954/100‑1 (MQ=32)
                                               tGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGTTGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGTAACTGCCAGGCATCAAATAAAACGAAACGc                                             >  1:3310777/1‑98 (MQ=255)
                                               tGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTc                                           <  2:2774627/100‑1 (MQ=33)
                                                gCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCa                                          >  1:2404775/1‑100 (MQ=32)
                                                 ccGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAg                                         >  2:904466/1‑100 (MQ=33)
                                                   gAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTc                                       <  1:47345/100‑1 (MQ=33)
                                                    aaCTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCg                                      <  2:2410278/100‑1 (MQ=33)
                                                     aCTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCgg                                     >  1:3902766/1‑100 (MQ=35)
                                                      cTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGa                                    >  1:1719296/1‑100 (MQ=35)
                                                      cTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGa                                    >  2:1947648/1‑100 (MQ=35)
                                                        cAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAg                                  >  2:2800849/1‑100 (MQ=38)
                                                        cAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAg                                  >  2:836569/1‑100 (MQ=38)
                                                          gAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGAc                                <  2:3208190/100‑1 (MQ=38)
                                                          gAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGAc                                >  2:886493/1‑100 (MQ=38)
                                                          gAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGAc                                >  1:1861253/1‑100 (MQ=38)
                                                          gAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGAc                                >  2:1330831/1‑100 (MQ=38)
                                                          gAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACG‑AAGGCTCAGTCGGAAGACt                               >  1:1324696/1‑100 (MQ=255)
                                                            aGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTg                              >  1:3941576/1‑100 (MQ=38)
                                                             gTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTgg                             >  2:780335/1‑100 (MQ=35)
                                                               gAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGc                           >  2:1668641/1‑100 (MQ=38)
                                                               gAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGc                           <  1:1765508/100‑1 (MQ=38)
                                                               gAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGc                           <  1:2100301/100‑1 (MQ=38)
                                                               gAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGc                           <  1:465265/100‑1 (MQ=38)
                                                               gAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGc                           <  1:904463/100‑1 (MQ=38)
                                                                aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGcc                          <  1:1100071/100‑1 (MQ=38)
                                                                aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGcc                          <  2:1435151/100‑1 (MQ=38)
                                                                aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGcc                          >  2:3971779/1‑100 (MQ=35)
                                                                aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGcc                          <  1:1733368/100‑1 (MQ=38)
                                                                  aCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGCACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCtt                        >  2:363765/1‑100 (MQ=38)
                                                                   cGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCttt                       >  1:2528796/1‑100 (MQ=38)
                                                                    gCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTc                      <  2:2835537/100‑1 (MQ=38)
                                                                      cGTAGCGCCGGTGGTAGTGTGGGGTTTCCTTATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAATGGCTCAGTCGGAAGACTGTGCCTTTCGt                    <  1:3189204/100‑1 (MQ=11)
                                                                        tAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGttt                  <  2:305490/100‑1 (MQ=38)
                                                                        tAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGttt                  <  1:3492217/100‑1 (MQ=38)
                                                                         aGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGtttt                 >  2:426024/1‑100 (MQ=38)
                                                                          acgacGAAGGTAGTGTGGGGTCTCCTCATGCGAGAGAAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTa                >  1:355655/5‑100 (MQ=255)
                                                                           cgcCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAGAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTAt               >  1:545349/1‑100 (MQ=255)
                                                                           cgcCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTAt               >  1:942946/1‑100 (MQ=38)
                                                                            gctgATGGTAGTGTGGGGTCTACTCATGCGAGGGGAGGGTACTGCCAGGCTTCAATGAAAAATAAGGGCGCAGTCGGCTGTCTGGGCGTTTCGtttt                 <  1:45740/94‑1 (MQ=2)
                                                                            gcCGATGGTAGTGTGGGGTCTCCTCATGCGAGATTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTGTCGTTTTATc              <  2:867231/100‑1 (MQ=255)
                                                                            gcCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATc              >  2:1794038/1‑100 (MQ=38)
                                                                              cGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtg            >  1:395780/1‑100 (MQ=35)
                                                                              cGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtg            <  1:303819/100‑1 (MQ=38)
                                                                               gATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgt           <  1:886491/100‑1 (MQ=38)
                                                                                   gTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTgttgtt       <  2:2362014/100‑1 (MQ=38)
                                                                                   gTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTgttgtt       >  1:951453/1‑100 (MQ=38)
                                                                                   gTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTgttgtt       <  2:2977519/100‑1 (MQ=38)
                                                                                    tAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGttgttt      <  2:421754/100‑1 (MQ=38)
                                                                                     aGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGttgtttg     >  1:1319156/1‑100 (MQ=38)
                                                                                     aGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCATTTTATCTGttgtttg     >  1:1064078/1‑100 (MQ=25)
                                                                                     aGTGCGGCGCCTCCTCAGGCGCAAGTAGCGAACTGCCAGCCATCAAATAAAACGAGAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTgttgtt       <  1:1583433/98‑1 (MQ=11)
                                                                                      gtgtGGGGTCTCCTAATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGttgtttg     <  1:583893/99‑1 (MQ=25)
                                                                                        gtgGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCg  >  2:754682/1‑100 (MQ=38)
                                                                                        |                                                                                                   
ACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCG  >  NC_000913/4040509‑4040696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.