New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3941521	30 (0.200)	10 (0.070)	7/168	NT	26.1%	intergenic (‑194/‑287)	yieP/rrsC	putative transcriptional regulator/16S ribosomal RNA of rrnC operon
	?	NC_000913	= 3941548	NA (NA)					intergenic (‑221/‑260)	yieP/rrsC	putative transcriptional regulator/16S ribosomal RNA of rrnC operon

GACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAG  >  NC_000913/3941519‑3941646                              |                                                                                                   gACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAg                              <  2:1369726/100‑1 (MQ=31) gACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAg                              <  2:1369025/100‑1 (MQ=31) gACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAg                              >  1:2448644/1‑100 (MQ=31) gACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGATCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCGTGACTCTGTAGCGGGaaa                               >  1:4157781/1‑99 (MQ=2) gACACGGAACAACGGCAAACACGCCGCCAGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAg                              <  1:1649833/100‑1 (MQ=14)   cacGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGGAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGc                             >  1:364911/1‑99 (MQ=17)   cacGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg                            <  2:935107/100‑1 (MQ=32)   cacGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg                            <  2:3295954/100‑1 (MQ=32)   cacGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg                            >  1:136761/1‑100 (MQ=33)   cacGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAG‑TGGAAAGCGt                           >  1:4028536/1‑100 (MQ=2)    acGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg                            >  2:2449601/1‑99 (MQ=32)    acGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGt                           >  2:3488607/1‑100 (MQ=33)     cGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGta                          >  2:1839704/1‑100 (MQ=33)     cGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGta                          >  1:2501204/1‑100 (MQ=32)     cGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGta                          <  2:1788221/100‑1 (MQ=33)      ggAACAACGGCAAACACGCTGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtat                         <  1:2428389/100‑1 (MQ=17)      ggAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtat                         <  2:16042/100‑1 (MQ=33)      ggAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtat                         >  1:2771780/1‑100 (MQ=32)      ggAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGta                          >  1:2764718/1‑99 (MQ=32)       gAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtatt                        <  1:3570230/100‑1 (MQ=33)       gAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtatt                        >  2:2171402/1‑100 (MQ=33)         acaacGGCAATCACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATTAATGCTTGACTCTGTAGCGGGAAAGCGtattat                      <  1:2804021/100‑1 (MQ=12)          caacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATg                     >  2:691489/1‑100 (MQ=33)          caacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATg                     >  1:4224386/1‑100 (MQ=33)          caacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATg                     >  2:2230296/1‑100 (MQ=33)           aacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGc                    <  2:1993674/100‑1 (MQ=33)           aacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGc                    <  1:1577905/100‑1 (MQ=33)           aacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGc                    >  2:1078337/1‑100 (MQ=33)           aacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGc                    <  2:2000935/100‑1 (MQ=33)           aacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGc                    >  2:1907271/1‑100 (MQ=33)           aacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGc                    <  2:3698408/100‑1 (MQ=33)           aacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGAAGAGAAAAAAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGc                    <  1:2170184/100‑1 (MQ=255)            accgCAAACACGCCGCCGGGTCAGCGGGGTGCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACGCTGTAGCGGGAAAGCGTATTATGc                    <  1:466017/96‑1 (MQ=255)            acGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGTGTATTATGca                   >  2:2380256/1‑100 (MQ=18)            acGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATgga                   >  2:1624957/1‑98 (MQ=18)            acGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca                   >  1:3945428/1‑100 (MQ=32)            acGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca                   >  2:3127869/1‑100 (MQ=32)            acGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca                   >  2:21338/1‑100 (MQ=33)            acGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca                   >  2:656631/1‑100 (MQ=33)            acGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca                   <  2:1890505/100‑1 (MQ=33)             cGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGcac                  >  1:2387709/1‑100 (MQ=33)             cGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGcac                  >  1:2775840/1‑100 (MQ=33)             cGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGcac                  >  1:2498242/1‑100 (MQ=33)              ggaaaaCACGCCGCCGGGCCGGCTGGGTTCTCCTGAGAACTCCGTCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGTGAAGCGTATTATGc                    >  1:3986004/4‑97 (MQ=11)               gaaaaCACGCCGCCGAGTCAGCGGGGTTCTCCTGAGAACTCTAGAAAAAAAAAAAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGcac                  <  1:475521/96‑1 (MQ=11)               gCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGATCTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCacac                <  1:4005605/100‑1 (MQ=18)               gCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCacac                >  1:1169010/1‑100 (MQ=32)                cAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACAcc               >  1:1159833/1‑100 (MQ=33)                cAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACAcc               >  2:2313214/1‑100 (MQ=33)                 aaaCACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACAccc              <  2:3121115/100‑1 (MQ=33)                   acacGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcg            >  2:791984/1‑100 (MQ=33)                    gtgtttgccgGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcgc           <  2:4127440/94‑1 (MQ=16)                    cacGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcgc           >  2:1013583/1‑100 (MQ=33)                    cacGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcgc           >  2:532606/1‑100 (MQ=33)                     acGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcgcg          >  2:1669973/1‑100 (MQ=33)                     acGCCGCCGGGTCAGCCGGGTTCTCCTGAGATCTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcgcg          <  1:2491831/100‑1 (MQ=12)                      cgccgcCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCgcgc         >  2:946579/1‑100 (MQ=33)                      cgccgcCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCgcgc         <  2:1898347/100‑1 (MQ=33)                      cgccgcCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCgcgc         >  2:1562068/1‑100 (MQ=33)                          gccgGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCt     >  2:3052228/1‑100 (MQ=33)                          gccgGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCt     >  1:183374/1‑100 (MQ=33)                          gccgGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCt     >  2:1155901/1‑100 (MQ=32)                           ccgGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTg    <  2:3952142/100‑1 (MQ=32)                           ccgGGTCAGCGGGGTGCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCCTATTATGCACACCCAGcgccgc      >  1:1258390/1‑98 (MQ=255)                            cgGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTga   <  1:669512/100‑1 (MQ=32)                             gggTCAGCGTACTTCTCCTGAGAATTCTGGCAGATAAAGCAAAAATAAATGCTTGCCTCTGTAGCCGGAAAGCGCATTATGCCCACCCCGCGCCGCTga   <  1:3519556/99‑1 (MQ=11)                             gggTCAGCGGGGTTCTCCTGAGAACTGCGGCGGAGAAAGCAAAAATAAATGCTTGCGTCTGTAGGGGGAAAGCGTATTATGCACACCCCGCGCCGCTgag  <  1:3462965/100‑1 (MQ=11)                             gggTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgag  <  1:1972389/100‑1 (MQ=33)                             gggTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgag  >  2:4073103/1‑100 (MQ=33)                             gggTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgag  <  1:3964754/100‑1 (MQ=33)                              ggTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGCCTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgag  >  1:35233/1‑99 (MQ=17)                              |                                                                                                   GACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAG  >  NC_000913/3941519‑3941646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.