New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4626299 =161 (1.050)8 (0.060) 5/168 NT 4.9% coding (388/1383 nt) radA DNA repair protein
?NC_000913 4626342 = 157 (1.080)coding (431/1383 nt) radA DNA repair protein
Rejected: Frequency below cutoff threshold.

Only 100 of 201 total aligned reads displayed.

GCTACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTGA  >  NC_000913/4626244‑4626441
                                                                                                  |                                                                                                   
gctACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCtt                                                                                                    >  2:2324975/1‑100 (MQ=255)
atctgttcgatgctggtttccgacaacatattgagattgtcagtcggcaggccaaGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCtt                                                                                                    >  1:1212111‑M1/56‑100 (MQ=255)
 ctACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTg                                                                                                   <  1:4061339/100‑1 (MQ=255)
 ctACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTg                                                                                                   >  1:3094996/1‑100 (MQ=255)
 ctACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTg                                                                                                   <  1:2496694/100‑1 (MQ=255)
  tACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTgg                                                                                                  >  1:280577/1‑100 (MQ=255)
  tACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTgg                                                                                                  <  2:4246200/100‑1 (MQ=255)
    cTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGcc                                                                                                <  1:4017117/100‑1 (MQ=255)
    cTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGcc                                                                                                <  2:4037247/100‑1 (MQ=255)
     tGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCt                                                                                               >  1:2643062/1‑100 (MQ=255)
      gCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTg                                                                                              >  2:4114930/1‑100 (MQ=255)
      gCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTg                                                                                              >  1:2062424/1‑100 (MQ=255)
      gCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTg                                                                                              >  2:624979/1‑100 (MQ=255)
      gCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTg                                                                                              >  2:1868715/1‑100 (MQ=255)
       cAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGc                                                                                             >  1:2834944/1‑100 (MQ=255)
         aaCGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCg                                                                                           <  1:3289952/100‑1 (MQ=255)
         aaCGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCg                                                                                           <  1:3332700/100‑1 (MQ=255)
           cGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGAc                                                                                         <  2:3783736/100‑1 (MQ=255)
             cTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTg                                                                                       >  2:755731/1‑100 (MQ=255)
               gtgCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGAc                                                                                     <  2:2750440/100‑1 (MQ=255)
               gtgCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGAc                                                                                     <  2:613356/100‑1 (MQ=255)
               gtgCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGAc                                                                                     >  2:857010/1‑100 (MQ=255)
                  cAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAAt                                                                                  >  1:3454924/1‑100 (MQ=255)
                   aaaCTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAAtc                                                                                 >  2:1405537/1‑100 (MQ=255)
                    aaCTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAAtct                                                                                <  2:3301756/100‑1 (MQ=255)
                      cTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCa                                                                              <  1:1058541/100‑1 (MQ=255)
                        ggCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAat                                                                            <  1:1500908/100‑1 (MQ=255)
                        ggCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAat                                                                            >  1:3233749/1‑100 (MQ=255)
                          cccAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAatat                                                                          >  2:2694886/1‑100 (MQ=255)
                          cccAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAatat                                                                          >  2:1879190/1‑100 (MQ=255)
                           ccAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATAtg                                                                         <  2:1759808/100‑1 (MQ=255)
                           ccAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATAtg                                                                         >  1:816654/1‑100 (MQ=255)
                           ccAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATAtg                                                                         <  2:2648782/100‑1 (MQ=255)
                            cagcagATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATAtgt                                                                        <  1:2783136/100‑1 (MQ=255)
                               cagATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGATGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATAtgttgt                                                                     >  1:392427/1‑100 (MQ=255)
                                 gATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCg                                                                   <  2:2178573/100‑1 (MQ=255)
                                 gATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCg                                                                   <  2:4129944/100‑1 (MQ=255)
                                 gATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCg                                                                   <  1:2879914/100‑1 (MQ=255)
                                   tGAAAACGCTGTATGTCACGGGGGAAGAGACGGTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACAAACAAACTCAATATGTTGTCGGa                                                                 >  1:297802/1‑100 (MQ=255)
                                   tGAAAAAGCGCTATGTCACCGGCGAAGAGGCGCTGCAACAGGCGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAAACTCAataaagcggcaga                                                                 >  1:837243/1‑90 (MQ=255)
                                     aaaaCGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGaaa                                                               >  2:3675751/1‑100 (MQ=255)
                                      aaaCGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAAc                                                              <  2:835853/100‑1 (MQ=255)
                                         cGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAg                                                           >  2:537309/1‑100 (MQ=255)
                                             gTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATc                                                       <  2:3411363/100‑1 (MQ=255)
                                             gTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATc                                                       >  2:3168991/1‑100 (MQ=255)
                                              tATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCg                                                      <  2:3279940/100‑1 (MQ=255)
                                              tATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCg                                                      <  2:2548833/100‑1 (MQ=255)
                                                tGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGaa                                                    >  2:3066635/1‑100 (MQ=255)
                                                tGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGaa                                                    >  1:2206032/1‑100 (MQ=255)
                                                 gTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAAc                                                   >  1:4112156/1‑100 (MQ=255)
                                                 gTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAAc                                                   >  2:349429/1‑100 (MQ=255)
                                                 gTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAAc                                                   <  1:379990/100‑1 (MQ=255)
                                                    caaggcgatgagcgcgcattgccacctgttgcagcgactcttcgccTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGa                                                >  2:2460521‑M2/47‑100 (MQ=255)
                                                    aCCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGa                                                >  2:2984165/1‑100 (MQ=255)
                                                    aCCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGa                                                >  2:2265612/1‑100 (MQ=255)
                                                     ccGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGAt                                               >  2:1031446/1‑100 (MQ=255)
                                                     aaggcgatgagcgcgcattgccacctgttgcagcgactcttcgccTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGAt                                               >  2:647619‑M2/46‑100 (MQ=255)
                                                      aggcgatgagcgcgcattgccacctgttgcagcgactcttcgccTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATc                                              >  2:1654617‑M2/45‑100 (MQ=255)
                                                      aggcgatgagcgcgcattgccacctgttgcagcgactcttcgccTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATc                                              >  1:2326949‑M2/45‑100 (MQ=255)
                                                      aggcgatgagcgcgcattgccacctgttgcagcgactcttcgccTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATc                                              >  2:2332928‑M2/45‑100 (MQ=255)
                                                        GCGAATAGTGGCTGCAACAGGTGGCAATGGGCGCACATCGCCTTGGCCTTCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTg                                            >  1:1486023‑M1/1‑100 (MQ=255)
                                                        GCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTg                                            >  1:489935‑M1/1‑100 (MQ=255)
                                                        GCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTg                                            >  2:448811‑M1/1‑100 (MQ=255)
                                                         CGAAGAGTCGCTGCAACAGATGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGc                                           <  1:1672474‑M1/100‑1 (MQ=255)
                                                          GAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGcc                                          <  1:1683026‑M1/100‑1 (MQ=255)
                                                            agagTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTg                                        >  1:141199/1‑100 (MQ=255)
                                                              agTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGAt                                      <  2:1530641/100‑1 (MQ=255)
                                                               gTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGAtt                                     >  1:1776384/1‑100 (MQ=255)
                                                               gTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGAtt                                     <  2:1767729/100‑1 (MQ=255)
                                                               gTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGAtt                                     >  1:696601/1‑100 (MQ=255)
                                                                 cGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTTGGAAACCAGCATCGAACAGATCTGCCTGATTGc                                   <  1:2562145/100‑1 (MQ=255)
                                                                 cGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGc                                   >  1:1239102/1‑100 (MQ=255)
                                                                 cGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGc                                   >  2:1610724/1‑100 (MQ=255)
                                                                  gCTGCAATAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGcc                                  >  1:740890/1‑100 (MQ=255)
                                                                     gCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgan                               <  1:1532587/100‑2 (MQ=255)
                                                                     gCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgaa                               >  1:641696/1‑100 (MQ=255)
                                                                      cAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgaag                              <  2:3218545/100‑1 (MQ=255)
                                                                      cAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgaag                              >  1:414158/1‑100 (MQ=255)
                                                                      cAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgaag                              <  2:3626370/100‑1 (MQ=255)
                                                                      cAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgaag                              >  1:925530/1‑100 (MQ=255)
                                                                       aaCAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgaaga                             >  2:4155311/1‑100 (MQ=255)
                                                                       aaCAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCgaaga                             <  2:3722679/100‑1 (MQ=255)
                                                                         cAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGaagaag                           <  2:3871544/100‑1 (MQ=255)
                                                                          aGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAagaaga                          <  1:232026/100‑1 (MQ=255)
                                                                            gTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGc                        >  1:3712236/1‑100 (MQ=255)
                                                                            gTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGc                        >  2:119408/1‑100 (MQ=255)
                                                                              ggCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGCACAGATCTGCCTGATTGCCGAAGAAGCGCaa                      >  1:3542453/1‑100 (MQ=255)
                                                                               gCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAAc                     >  1:3075395/1‑100 (MQ=255)
                                                                               gCAATGCGCGCTCATCGCCTTGGCCTGCCCACAGACAATCTCAATAAGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAAc                     <  2:1347185/100‑1 (MQ=255)
                                                                                cAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAAcc                    >  2:2106813/1‑100 (MQ=255)
                                                                                cAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAAcc                    >  2:1932954/1‑100 (MQ=255)
                                                                                  aTGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGa                  <  2:888773/100‑1 (MQ=255)
                                                                                    gcgcgcTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAg                <  1:2031685/100‑1 (MQ=255)
                                                                                     cgcgcTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGc               <  1:610403/100‑1 (MQ=255)
                                                                                     cgcgcTCATCGCCTTGGCCTGCCGACTGACAATCCCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGCAGAGCAACCGAAGc               >  1:339139/1‑100 (MQ=255)
                                                                                      gcgcTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCt              <  1:2255993/100‑1 (MQ=255)
                                                                                           cATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTGGTCGGAAACCAGCATCGAACAGATCTGCCTGTTTGCCGAAGAAGAGCAACCGAAGCTGATgg         <  2:2801433/100‑1 (MQ=255)
                                                                                               gccTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTaa      >  1:1806892‑M2/4‑99 (MQ=255)
                                                                                                 cTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTg   >  2:2859522‑M2/2‑100 (MQ=255)
                                                                                                  ttGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTGa  <  2:2780386/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
GCTACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGCTGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAACAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTGA  >  NC_000913/4626244‑4626441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.