New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 225998NA (NA)50 (0.340) 20/170 NT NA noncoding (240/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 226015 NA (NA)noncoding (257/2904 nt) rrlH 23S ribosomal RNA of rrnH operon

Only 100 of 146 total aligned reads displayed.

ATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATG  >  NC_000913/225923‑226114
                                                                                            |                                                                                                     
aTAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGggagg                                                                                                <  1:1758081/100‑1 (MQ=11)
 tAGGTTAATGAGGTGATCCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGggagg                                                                                                <  2:611651/99‑1 (MQ=2)
   ggTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGgaggag                                                                                              >  1:3153833/1‑99 (MQ=32)
   ggTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGc                                                                                             >  2:3351926/1‑100 (MQ=32)
   ggTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGc                                                                                             >  1:3037046/1‑100 (MQ=32)
   ggTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGc                                                                                             >  1:1437838/1‑100 (MQ=32)
   ggTTAATGAGGCGAACCGGGGGAACTGAAACAACTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCAAGCGAAGGGGGAGGAGc                                                                                             >  1:1496190/1‑100 (MQ=255)
      tAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCa                                                                                          >  2:788272/1‑100 (MQ=32)
       aaTGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCag                                                                                         <  1:2813360/100‑1 (MQ=33)
        aTGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCa                                                                                          >  1:2967154/1‑98 (MQ=32)
          gAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGc                                                                                      <  2:494585/100‑1 (MQ=33)
          gAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGc                                                                                      <  2:2736457/100‑1 (MQ=33)
          gAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGc                                                                                      <  2:1438567/100‑1 (MQ=33)
           aGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGcc                                                                                     <  1:2097081/100‑1 (MQ=33)
           aGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGcc                                                                                     <  1:2468681/100‑1 (MQ=32)
            ggCGACCCGGGGGAACAGAAACATCTGAGTACCCCGAAGAAAAGAAGTCAACCGAGATTCCCCCAGTAGCAGGGAGCGGACGGGGCGGAGcgccgatcc                                                                                     >  1:3193088/1‑91 (MQ=11)
            ggCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCt                                                                                    >  2:707118/1‑100 (MQ=33)
              cGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGCGGAGCCCAGAGCCTg                                                                                   >  1:98329/1‑99 (MQ=17)
               gAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGaa                                                                                 <  2:2624133/100‑1 (MQ=33)
               gAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGaa                                                                                 <  2:2271319/100‑1 (MQ=33)
               gAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGaa                                                                                 >  2:3567502/1‑100 (MQ=33)
                 aCCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATc                                                                               <  1:1077397/100‑1 (MQ=32)
                  ccGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCa                                                                              >  2:4000118/1‑100 (MQ=33)
                   cGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑g                                                                           <  1:204281/100‑1 (MQ=33)
                    gggggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gt                                                                          <  1:4159912/100‑1 (MQ=33)
                    gggggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gt                                                                          <  2:3821266/100‑1 (MQ=32)
                    gggggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑g                                                                           >  1:1317636/1‑99 (MQ=32)
                       ggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gtgtg                                                                       >  2:305636/1‑100 (MQ=32)
                       ggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gtgtg                                                                       >  1:3393000/1‑100 (MQ=32)
                       ggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gtgtg                                                                       <  2:2858730/100‑1 (MQ=33)
                         aaCTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gtgtgtg                                                                     >  1:1558739/1‑100 (MQ=32)
                         aaCTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gtgtgtg                                                                     >  2:2796619/1‑100 (MQ=33)
                         aaCTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gtgtgtg                                                                     <  1:1499612/100‑1 (MQ=33)
                         aaCTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gtgtgtg                                                                     <  2:726602/100‑1 (MQ=33)
                         aaCTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gtgtgtg                                                                     <  1:548860/100‑1 (MQ=33)
                          aCTGAAATATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGTGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gtgtgtgt                                                                    <  1:1724254/100‑1 (MQ=16)
                          aCTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gtgtgtgt                                                                    <  1:654007/100‑1 (MQ=33)
                           cTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gtgtgtgtg                                                                   >  1:3751247/1‑100 (MQ=33)
                            tGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATACCCCCAGTAGCGGCGATCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑gtgtgtgtgt                                                                  <  1:3008523/100‑1 (MQ=12)
                             gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGtt                                                                 <  2:1994998/100‑1 (MQ=33)
                              aaaCATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTa                                                                <  2:3106823/100‑1 (MQ=33)
                               aaCATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGGGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAg                                                               <  1:1836622/100‑1 (MQ=18)
                                aCATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGt                                                              <  1:1339274/100‑1 (MQ=33)
                                 cATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTg                                                             <  2:840923/100‑1 (MQ=33)
                                   tCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGa                                                           <  1:1614388/100‑1 (MQ=33)
                                     tAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAg                                                         >  1:4193230/1‑100 (MQ=33)
                                     tAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAg                                                         <  1:3350961/100‑1 (MQ=32)
                                     tAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAg                                                         <  1:1971143/100‑1 (MQ=33)
                                           ccccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTg                                                   >  1:2841365/1‑100 (MQ=33)
                                            cccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTgg                                                  <  2:1956110/100‑1 (MQ=33)
                                             ccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTc                                                     >  1:3749522/1‑96 (MQ=32)
                                             ccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGa                                                 >  1:2617759/1‑100 (MQ=32)
                                             ccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGACCCTGAATCA‑‑GAGTGTGTGTTAGTGAAAGc                                                        >  1:1600378/1‑93 (MQ=255)
                                              cGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGaa                                                <  2:2458604/100‑1 (MQ=33)
                                                 ggAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAgg                                             >  1:590739/1‑100 (MQ=33)
                                                 ggAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAgg                                             <  1:640163/100‑1 (MQ=33)
                                                 ggAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAgg                                             <  2:2926432/100‑1 (MQ=33)
                                                 ggAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAgg                                             <  2:1432550/100‑1 (MQ=33)
                                                 ggAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGCGCGTGGTAGTGGAAGCGTCTgg                                                  >  1:142206/1‑95 (MQ=255)
                                                   aaaaGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGACTGGAAAGgcg                                           >  1:453662/1‑100 (MQ=18)
                                                    aaaGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgc                                          >  2:3982166/1‑100 (MQ=33)
                                                    aaaGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgc                                          <  2:1182631/100‑1 (MQ=32)
                                                    aaaGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgc                                          >  2:206707/1‑100 (MQ=33)
                                                      aGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgcgc                                        <  2:1603617/100‑1 (MQ=33)
                                                      aGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGGGTTAGTGGAAGCGTCTGGAAAGgcgcgc                                        >  1:1006649/1‑100 (MQ=18)
                                                       gAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGcgcgcg                                       <  1:1533690/100‑1 (MQ=33)
                                                       gAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGACTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGcgcgcg                                       >  2:2109785/1‑100 (MQ=17)
                                                             aaCCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAg                                 >  2:1481958/1‑100 (MQ=33)
                                                                 gagaTTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTg                             <  2:152732/100‑1 (MQ=33)
                                                                  agaTTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGa                            <  1:4076330/100‑1 (MQ=33)
                                                                  agaTTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGa                            >  2:2718838/1‑100 (MQ=33)
                                                                   gaTTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGAc                           <  1:2511349/100‑1 (MQ=33)
                                                                    aTTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACa                          <  1:2450430/100‑1 (MQ=33)
                                                                        ccccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGccc                      >  2:2349334/1‑100 (MQ=33)
                                                                         cccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGcccc                     <  1:3745901/100‑1 (MQ=33)
                                                                          ccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCg                    >  2:1826270/1‑100 (MQ=33)
                                                                          ccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCg                    <  2:3097298/100‑1 (MQ=32)
                                                                          ccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGGCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCg                    >  1:4225398/1‑100 (MQ=18)
                                                                           cAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACTGGGTGACAGCCCCGt                   <  1:1702918/100‑1 (MQ=18)
                                                                           cAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGt                   <  2:20155/100‑1 (MQ=33)
                                                                           cAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGt                   <  1:4007931/100‑1 (MQ=33)
                                                                             gTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTac                 <  1:1837661/100‑1 (MQ=33)
                                                                             gTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTac                 <  2:590741/100‑1 (MQ=32)
                                                                             gTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTac                 <  2:428282/100‑1 (MQ=33)
                                                                             gTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTac                 <  1:1972734/100‑1 (MQ=32)
                                                                             gTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTac                 <  1:3568431/100‑1 (MQ=32)
                                                                             gTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTac                 <  1:814743/100‑1 (MQ=33)
                                                                               aGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTacac               <  2:4173159/100‑1 (MQ=32)
                                                                                 cggcgAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTacac               >  2:4159490/1‑100 (MQ=255)
                                                                                 cggcgAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACaa             >  1:76361/1‑100 (MQ=33)
                                                                                  ggcgAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGTGATACAGGGTGACAGCCCCGTACACaaa            <  2:2839524/100‑1 (MQ=18)
                                                                                     gagcgaACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCAGTACAaaaaaa          <  1:4057477/99‑1 (MQ=12)
                                                                                      agcgaACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATg        <  1:1105679/100‑1 (MQ=32)
                                                                                      agcgaACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGGGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATg        <  2:1960779/100‑1 (MQ=17)
                                                                                       gcgaACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGc       >  2:1540725/1‑100 (MQ=33)
                                                                                        cgaACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGca      <  1:4007583/100‑1 (MQ=32)
                                                                                         gaACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGcac     <  1:3663684/100‑1 (MQ=32)
                                                                                         gaACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGcac     <  1:433607/100‑1 (MQ=32)
                                                                                         gaACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGcac     <  2:1317640/100‑1 (MQ=33)
                                                                                          aaCGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGcaca    >  2:1836281/1‑100 (MQ=32)
                                                                                            |                                                                                                     
ATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCA‑‑GTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATG  >  NC_000913/225923‑226114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.