BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	699425 =	NA (NA)	7 (0.050)	5/164	NT	NA	noncoding (1/98 nt)	RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	699455 =	NA (NA)	7 (0.050)	5/164	NT	NA	noncoding (31/98 nt)	RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 170 total aligned reads displayed.

TTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGT  >  NC_000913/699356‑699554

tttAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                                                     <  1:3041994/100‑1 (MQ=255)

tgcctgatgcgctacgcttatcaggcctacgcagctcctgcaatatattgaattttcatgcttttgtaggccggatgcggcgtgaacgccttatccggcc                                                                                                     <  1:2341687‑M2/1‑1 (MQ=255)

  cctgatgcgctacgcttatcaggcctacgcagctcctgcaatatattgaattttcatgcttttgtagGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                                                   >  2:1347420‑M1/68‑100 (MQ=255)

   aGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTa                                                                                                   >  2:3879344/1‑99 (MQ=255)

        gTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAg                                                                                             <  2:894701/100‑1 (MQ=255)

        gTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAg                                                                                             <  2:2431012/100‑1 (MQ=255)

          tttATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCa                                                                                           <  1:2166790/100‑1 (MQ=255)

          tttATTGAATGTTTATATTTTACGGGGGCCAAAATGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCa                                                                                           >  1:2820171/1‑100 (MQ=255)

           ttATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCAt                                                                                          <  2:3529294/100‑1 (MQ=255)

            tATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATg                                                                                         >  2:416195/1‑100 (MQ=255)

             aTTGAATGTTTATATTTTACGGGGGCTAAATTGCTGACAAAGTGAGATTTGTTCATGCCGGATGCGGAGGGAACGCCTTATCCGGCCTACAGACGCATg                                                                                         >  1:3376580/1‑99 (MQ=21)

              ttGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGaa                                                                                       >  2:230758/1‑100 (MQ=255)

              ttGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGaa                                                                                       >  1:825180/1‑100 (MQ=255)

              ttGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGa                                                                                        >  1:3461762/1‑99 (MQ=255)

               tGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGaaa                                                                                      >  1:3795019/1‑100 (MQ=255)

               tGAATGTTTATATTTTACGGGGGACAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCAGGCCTACAAAAGCATGaaa                                                                                      >  1:1798779/1‑100 (MQ=255)

                gAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGaaaa                                                                                     >  1:295831/1‑100 (MQ=255)

                gAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGaaaa                                                                                     >  2:2572816/1‑100 (MQ=255)

                   tGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTc                                                                                  <  1:3496119/100‑1 (MQ=255)

                   tGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTc                                                                                  <  2:1332832/100‑1 (MQ=255)

                   tGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTc                                                                                  <  2:2153161/100‑1 (MQ=255)

                   tGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTc                                                                                  >  1:3182197/1‑100 (MQ=255)

                    gTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCa                                                                                 <  2:2915201/100‑1 (MQ=255)

                     tttATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGTTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCaa                                                                                >  1:1056998/1‑100 (MQ=255)

                     tttATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCaa                                                                                >  1:2686988/1‑100 (MQ=255)

                       tataTTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAata                                                                              <  2:933957/100‑1 (MQ=255)

                       tataTTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAata                                                                              >  1:1036669/1‑100 (MQ=255)

                       tataTTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAata                                                                              >  2:4074403/1‑100 (MQ=255)

                        gcttacgcagctcctggaatatatggaattttcatgcttttgtagACAGGATGCTGAGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAatat                                                                             >  1:910279‑M1/46‑100 (MQ=255)

                        atatTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAatat                                                                             <  2:3069733/100‑1 (MQ=255)

                          atTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAatatat                                                                           >  2:3371166/1‑100 (MQ=255)

                          atTTTACGGGGACCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAatatat                                                                           >  1:3277134/1‑100 (MQ=255)

                           ttttACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAACTTCAATATAtt                                                                          >  1:141717/1‑100 (MQ=255)

                           ttttACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATAtt                                                                          >  2:2632068/1‑100 (MQ=255)

                           ttttACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATAtt                                                                          >  2:381281/1‑100 (MQ=255)

                              tACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCa                                                                       <  2:2344437/100‑1 (MQ=255)

                                  ggggCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAg                                                                   <  1:48353/100‑1 (MQ=255)

                                     gCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGACGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTg                                                                >  2:3984037/1‑100 (MQ=255)

                                       cAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCg                                                              >  1:2088176/1‑100 (MQ=255)

                                         aaTTGCTCACAAATTGCGATTTGCACATCTCGTATGAGGCCTGAACGCCAGATCAAGCCTACAAAAGCCGGAAGATTCAATATATTGCAGGATCTGCg                                                              <  1:4114533/98‑1 (MQ=12)

                                          aTTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAg                                                           <  1:1669718/100‑1 (MQ=255)

                                             gCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGcc                                                        <  1:2383742/100‑1 (MQ=255)

                                             gCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGcc                                                        <  1:3448832/100‑1 (MQ=255)

                                              cTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCt                                                       >  2:1972523/1‑100 (MQ=255)

                                               tGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTg                                                      >  1:775066/1‑100 (MQ=255)

                                               tGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTg                                                      >  1:3623363/1‑100 (MQ=255)

                                                gACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGa                                                     >  2:853029/1‑100 (MQ=255)

                                                gACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGa                                                     >  2:1723648/1‑100 (MQ=255)

                                                   aaaGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATaa                                                  <  2:1538994/100‑1 (MQ=255)

                                                    aaGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAACTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAg                                                 <  2:3019531/100‑1 (MQ=255)

                                                    aaGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAg                                                 <  2:2308731/100‑1 (MQ=255)

                                                     aGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGc                                                <  1:4074381/100‑1 (MQ=255)

                                                     aGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGc                                                >  1:1147874/1‑100 (MQ=255)

                                                      gTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCg                                               <  2:2866703/100‑1 (MQ=255)

                                                        gCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTa                                             <  2:606632/100‑1 (MQ=255)

                                                         cGATTTTTTCATGCCGGATGCGGCTTGATCGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAg                                            <  1:1910384/100‑1 (MQ=255)

                                                          gATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAgc                                           <  1:3111665/100‑1 (MQ=255)

                                                          gATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAgc                                           >  2:3780800/1‑100 (MQ=255)

                                                          gATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAgc                                           <  2:2463249/100‑1 (MQ=255)

                                                          gATTTGTTCATGCCGGATGCGGCGTGAACGCCTCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAgc                                           <  1:1275788/100‑1 (MQ=255)

                                                          cttccgatcttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAgc                                           <  2:3012999/90‑1 (MQ=255)

                                                           aTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAgcg                                          <  1:2635476/100‑1 (MQ=255)

                                                           aTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAgcg                                          <  2:2513156/100‑1 (MQ=255)

                                                             ttGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCa                                        <  1:3259835/100‑1 (MQ=255)

                                                             ttGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCa                                        >  2:2916149/1‑100 (MQ=255)

                                                               gTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATc                                      <  2:825182/100‑1 (MQ=255)

                                                                   aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGc                                  >  1:2143879/1‑100 (MQ=255)

                                                                    tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAgcagatcggaag                                 >  1:3012987/1‑90 (MQ=255)

                                                                    ggccggataaggcgttcacgccgcatccggcCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                 >  2:3113072‑M2/32‑100 (MQ=255)

                                                                    gGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                 <  2:2072627‑M1/99‑1 (MQ=255)

                                                                    gGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                 <  1:2341687‑M1/99‑1 (MQ=255)

                                                                     gccggataaggcgttcacgccgcatccggcCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAg                                >  1:3816313‑M2/31‑100 (MQ=255)

                                                                     gccggataaggcgttcacgccgcatccggcCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAg                                >  1:3879926‑M2/31‑100 (MQ=255)

                                                                     GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAg                                <  1:4144434‑M1/100‑1 (MQ=255)

                                                                        GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGttt                             >  2:3072169‑M1/1‑100 (MQ=255)

                                                                           TGCGGCGTGAACGCCTTATCGGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGc                          >  1:942007‑M1/1‑100 (MQ=255)

                                                                            gcggcgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCg                         <  2:2136115/100‑1 (MQ=255)

                                                                             cagcgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGGAGCGCATCAGGCAGTTTGGCGt                        >  2:1126468/3‑100 (MQ=255)

                                                                              ggcgTGAACGCCTTATCCGGCCTACGAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGtt                       >  2:1042972/1‑100 (MQ=255)

                                                                              ggcgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGtt                       <  1:3357720/100‑1 (MQ=255)

                                                                              ggcgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGtt                       >  1:1400326/1‑100 (MQ=255)

                                                                              ggcgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGtt                       >  2:4257824/1‑100 (MQ=255)

                                                                               gcgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGttt                      >  1:1242455/1‑100 (MQ=255)

                                                                                   gAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGtca                  >  2:1500266/1‑100 (MQ=255)

                                                                                   gAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGtca                  <  2:2230318/100‑1 (MQ=255)

                                                                                   gAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGtca                  >  1:112659/1‑100 (MQ=255)

                                                                                      cGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTATCGCATCAGGCAGTTTGGTGTTTGtcatc                <  2:1420090/99‑1 (MQ=255)

                                                                                        ccTTATGCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGGCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCaga             <  2:2100178/100‑1 (MQ=255)

                                                                                        ccTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCaga             >  1:935943/1‑100 (MQ=255)

                                                                                         cTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCagag            >  2:1638616/1‑100 (MQ=255)

                                                                                          ttATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGtcatca               <  1:3032107/96‑1 (MQ=255)

                                                                                          ttATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGc           >  2:58824/1‑100 (MQ=255)

                                                                                          ttATCCGACCTGCAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCTTAGCGCATCAGGCAGTCTGGCGTTTGTCATCag              >  1:2240198/1‑97 (MQ=18)

                                                                                             tccggcCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCaa        >  2:218627‑M2/7‑100 (MQ=255)

                                                                                              ccggcCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAAc       <  2:504406‑M2/95‑1 (MQ=255)

                                                                                              ccggcCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAAc       <  2:218954‑M2/95‑1 (MQ=255)

                                                                                              ccggcCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAAc       >  1:2176904‑M2/6‑100 (MQ=255)

                                                                                               tctcCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAAcc      <  2:3183552‑M2/96‑1 (MQ=255)

                                                                                                 gcCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCAc    <  2:1360585‑M2/98‑1 (MQ=255)

                                                                                                  cCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACg   <  2:2431289‑M2/99‑1 (MQ=255)

TTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGT  >  NC_000913/699356‑699554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.