| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,985 | T→C | 30.3% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 30.3% | 506.2 / 264.0 | 313 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (109/109); new base C (86/9); total (195/118) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.56e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.67e-01 | |||||||||||
Only 100 of 315 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084 | gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2252936/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:3246108/1‑100 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCTTTAACGCCTTacc < 2:2898226/100‑3 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 2:2335483/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGAGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:3039823/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 2:2086148/1‑100 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:3732519/100‑2 (MQ=37) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 2:3968923/100‑2 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:4047473/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:646497/100‑3 (MQ=37) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑a < 2:3414368/100‑1 (MQ=255) cgttGCACGCAGAGGTACAGCGCCCCCGGGTATATAGATTGTTGTCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑a < 1:3858042/96‑1 (MQ=21) cgcTGTTCGCAGAGGCACAGCGCTACCGGGTATACAGATTGGTGACAAAGTGCGCTTTGTTTATTCCGGATAAGGCGTTATCGCCGCATCCGGCAT‑‑aaac < 1:1002361/100‑4 (MQ=21) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaa > 1:1268005/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaa > 2:1877786/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaa > 2:1919390/1‑100 (MQ=255) cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaaa < 2:3086585/100‑1 (MQ=255) tGCAGGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAt < 1:2319343/100‑1 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAt < 2:1767500/100‑1 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAt < 2:1124123/100‑1 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGt > 1:4011915/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 1:1867245/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 1:2980139/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 1:147500/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGc < 2:1994244/100‑1 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAtt > 1:2217753/1‑100 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAtt > 2:2262042/1‑100 (MQ=255) gacacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAtt > 2:3654339/3‑100 (MQ=255) gtgcaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGTTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAGCGTGCa < 1:3399583/92‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCa > 2:4241280/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt < 2:1035893/100‑1 (MQ=255) aGCGCCACCGGGTCTACAGATTGTTGACAAAGTGCGCCTTGTTTATACCAGATTCGGCGTTCACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTTAATa > 1:462295/1‑100 (MQ=17) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑c < 2:2502954/100‑1 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑At‑ttt < 2:3308850/100‑1 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTc > 1:577399/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑g < 2:2109352/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑g < 2:3196924/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGAGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑At‑ttt > 1:407070/1‑97 (MQ=255) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAg > 2:2848951/7‑99 (MQ=17) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGcc < 1:2871173/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGcc < 1:644276/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAggagat > 2:1686246/1‑96 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTg < 2:1370459/99‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATaa > 1:3012156/1‑98 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCg < 1:1978695/100‑1 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCg > 2:2175300/1‑100 (MQ=255) tGCGCGTTGTTTATGCCGGATTCGGAGTTATCGGCTTATCTGGCCT‑‑AC‑AAAATCGTGCAAACTCAAGACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCgg < 1:2624705/100‑1 (MQ=18) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAg < 2:3472903/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc < 1:1911322/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc > 2:4162666/1‑100 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc < 1:1567754/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg < 1:1531116/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg > 2:547377/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg < 1:2047092/100‑1 (MQ=255) nctttgtaggCCGGATAAGGCGTTAACGCCGCATCAGGCATTAAC‑AAAGTCCTGCAGATTCAATATATTG‑CA‑GG‑TA‑CTGC‑‑GTAGGCCTGATAAGCGTAgc > 1:3130058/10‑100 (MQ=9) attttgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCATAAAC‑AAAATCGTGCAAATTCAATAAATTG‑CA‑GA‑AT‑TTCC‑‑GTAGGCATGCTAAGCGGa > 1:3543556/10‑98 (MQ=2) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:3805391/100‑1 (MQ=255) tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAACATATTG‑CA‑AT‑TC‑TCTT‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:27686/8‑100 (MQ=18) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 1:1600225/1‑100 (MQ=255) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 1:2553322/1‑100 (MQ=255) tgtaggCCGGATAAGGCGCTTACGCCGCATCCGGCCT‑‑AC‑AAGAACGTGCAAATTCAACAAATTGTGATGC‑AT‑CCT‑‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:115490/6‑100 (MQ=21) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2557763/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCAT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:679164/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:251099/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:3502878/4‑100 (MQ=21) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GG‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3457958/4‑100 (MQ=21) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAGTCGTGCAAATTCACTACATTG‑AG‑GA‑AT‑TTAC‑‑GTAGGCCTGATAAGGGGAGCGCATCAgg > 1:861178/1‑100 (MQ=17) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 1:1429360/100‑1 (MQ=255) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 2:184129/1‑100 (MQ=255) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:384718/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3253923/3‑100 (MQ=18) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 1:1191859/100‑1 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑CCTT‑‑CTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2564641/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTG‑C‑‑‑A‑AT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2640927/2‑100 (MQ=18) gtcggataaggcgTTCACGCCGCATCCGACCC‑‑AC‑AAAGTCTTGCAAAATCAATAAATTG‑CA‑GG‑AA‑CGAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCaa > 1:3884023/10‑99 (MQ=21) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:4083402/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:1646114/1‑100 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2704278/1‑99 (MQ=18) cggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 1:1786424/8‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:2957040/7‑98 (MQ=21) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3491711/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1127275/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTG‑CA‑GT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:1312661/7‑96 (MQ=25) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 1:280916/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAACATGCAAATTCAATAGATTG‑CA‑GAGAT‑TAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 2:494128/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAACATGCAAATTCAATAGATTG‑CA‑GA‑GA‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:1320148/7‑100 (MQ=17) ggataaggcgTTAACGCCGCACCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:3754633/7‑100 (MQ=18) gataacgcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTG‑CC‑GA‑AA‑CCCT‑‑GTAGGCCTCAACAGCGGCGCGGATCACGc > 1:2085452/7‑94 (MQ=9) aTGCGGCGTTAACGTCTTATCCGGCCT‑‑AC‑AAAATCGGGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2836547/100‑1 (MQ=255) taaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTG‑CA‑TG‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAAGCAGTtttgc > 2:1971434/4‑100 (MQ=17) tGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 2:2425261/1‑100 (MQ=255) tGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 1:813497/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATACGCGGAGCGCATCAGGCATTtttgcct < 2:2605978/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:2889977/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc > 2:771379/1‑100 (MQ=255) ttAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:871169/99‑1 (MQ=255) accGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:2888554/3‑100 (MQ=255) cGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa > 2:1487354/1‑100 (MQ=255) gCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 2:1515926/1‑100 (MQ=255) cTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc < 2:1605103/100‑1 (MQ=255) | TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |