| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,808,281 | (A)5→4 | coding (486/861 nt) | yniA → | fructosamine kinase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,808,277 | 0 | A | . | 95.1% | 346.1 / 10.6 | 81 | coding (482/861 nt) | yniA | fructosamine kinase family protein |
| Reads supporting (aligned to +/- strand): ref base A (1/3); new base . (38/39); total (39/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
TCTCCACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAGAAAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGCG > NC_000913/1808184‑1808372 | tctcCACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAGAAAAggg < 2:2023892/100‑1 (MQ=255) ctcCACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAGaaaaggga > 1:801487/1‑96 (MQ=255) ctcCACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAGAAAAggga < 2:1800504/100‑2 (MQ=255) ctcCACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAGAAAAggga > 2:1650238/1‑99 (MQ=255) ccACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATc < 2:1667259/100‑1 (MQ=255) ccACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATc > 1:25837/1‑100 (MQ=255) acaACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGc < 1:1822117/100‑1 (MQ=255) acaACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGc > 2:1979109/1‑100 (MQ=255) caACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCt > 1:1753763/1‑100 (MQ=255) aCTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCttt < 2:1151315/100‑1 (MQ=255) ccACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCgg < 1:884390/100‑1 (MQ=255) ccACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCgg > 1:2232450/1‑100 (MQ=255) ccACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTATTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCgg > 2:1436906/1‑100 (MQ=255) cacaGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGc < 2:764676/100‑1 (MQ=255) tctccAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAat < 2:791715/97‑1 (MQ=255) ccAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAataga > 1:791716/1‑98 (MQ=255) cAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCg > 1:858852/1‑100 (MQ=255) cAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATACCg > 2:2052806/1‑100 (MQ=255) acacCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGAc < 2:1899103/100‑1 (MQ=255) acacCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGAc < 2:2031499/100‑1 (MQ=255) acCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGc < 1:323721/100‑1 (MQ=255) tGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCAt > 2:1506191/1‑100 (MQ=255) gCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCAtcg < 2:2323598/100‑1 (MQ=255) cAACGTCGCTGGTCAACGTTTTTTTTTTTTTTTTGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCTTCGCCAtcg > 2:1132453/1‑99 (MQ=255) cAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCAtcgt > 1:1776933/1‑100 (MQ=255) aCGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCAtcgtcg < 2:858850/100‑1 (MQ=255) tCGCTGGTTAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGa < 2:598360/98‑1 (MQ=255) tCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGc < 1:2063671/100‑1 (MQ=255) cGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCa < 2:801486/100‑1 (MQ=255) cGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCa > 2:1160554/1‑100 (MQ=255) cGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCa < 2:1776928/100‑1 (MQ=255) cGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCa < 1:1107364/100‑1 (MQ=255) ggTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATAtt < 1:776940/100‑1 (MQ=255) aaCGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTcagc < 2:1753758/100‑1 (MQ=255) aCGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTcagca > 1:276897/1‑100 (MQ=255) cGTTTTTTGCTGAACAACGGATTGGCTGGCAGGTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTcagcag < 1:941763/100‑1 (MQ=255) ttttttGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCg < 2:1372556/100‑1 (MQ=255) gCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGc < 1:418153/100‑1 (MQ=255) gCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGc < 1:1719725/100‑1 (MQ=255) tGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCt > 1:1662254/1‑100 (MQ=255) tGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCt > 1:1661864/1‑100 (MQ=255) gAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTc < 2:1451787/100‑1 (MQ=255) gAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTc < 1:1160556/100‑1 (MQ=255) gAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAAGATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGccgc > 2:815904/1‑98 (MQ=255) aacaacGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTca < 1:1399759/100‑1 (MQ=255) aacaacGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTca < 1:1188723/100‑1 (MQ=255) acaacGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTcac > 2:966689/1‑100 (MQ=255) caacGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTcaca > 1:850099/1‑100 (MQ=255) acGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATc > 1:410336/1‑100 (MQ=255) acGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATc > 1:557815/1‑100 (MQ=255) cGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATcc > 2:727210/1‑99 (MQ=255) cGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCa > 1:1779206/1‑100 (MQ=255) ggATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCaa > 2:652063/1‑100 (MQ=255) gATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAAc < 1:815906/100‑1 (MQ=255) gATTGGCAGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAAc > 1:1230970/1‑100 (MQ=255) ggctggcAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCa < 2:850097/100‑1 (MQ=255) ggctggcAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCa > 2:601196/1‑100 (MQ=255) gctggcAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAg > 2:211338/1‑100 (MQ=255) ctggcAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGc > 1:153741/1‑100 (MQ=255) tccgatctGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGcc < 1:1132974/93‑1 (MQ=255) cAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGccagt > 1:1708365/1‑97 (MQ=255) cAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTtc < 2:2232442/100‑1 (MQ=255) gTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTtctc > 1:699599/1‑100 (MQ=255) ttGGAACTGGCTGCAGAAAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTtctc < 2:1874370/100‑1 (MQ=255) ttGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTctct < 1:1979116/100‑1 (MQ=255) ggAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGccagatcgga > 2:1132972/1‑92 (MQ=255) ggAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGt > 2:1221009/1‑100 (MQ=255) ggAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGt < 2:153739/100‑1 (MQ=255) gatctgCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTg < 2:1971120/95‑1 (MQ=255) aaCTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTg < 1:601197/100‑1 (MQ=255) aaCTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTg < 2:1662249/100‑1 (MQ=255) aaCTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTg < 2:1661859/100‑1 (MQ=255) cTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCa > 2:1049671/1‑100 (MQ=255) tGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCAc > 1:1795980/1‑100 (MQ=255) tGGCTGCAG‑AAAAGGGAGCTCTTTCGGCAATATCTACGCCATCGTCTACCATATTCAGCAGCGTCTGGCCTCACCTCAACCGCAGCCTTCTCTGTTg < 2:283144/97‑1 (MQ=255) gCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTgagatc > 1:1971127/1‑95 (MQ=255) gCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACgg > 1:722530/1‑100 (MQ=255) cTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGc > 2:166260/1‑100 (MQ=255) cTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGc < 1:1475233/100‑1 (MQ=255) cTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGc < 1:1436910/100‑1 (MQ=255) tGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGCg > 2:333601/1‑100 (MQ=255) tGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGCg > 1:484349/1‑100 (MQ=255) | TCTCCACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAGAAAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGCG > NC_000913/1808184‑1808372 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |