Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,540,351 | (A)6→5 | coding (189/228 nt) | feoA → | ferrous iron transporter, protein A |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,540,346 | 0 | A | . | 94.9% | 329.0 / 12.7 | 79 | coding (184/228 nt) | feoA | ferrous iron transporter, protein A |
Reads supporting (aligned to +/- strand): ref base A (1/3); new base . (35/39); total (36/43) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.20e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTTGGCATGTTACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCAAAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAATTGGTAATCC > NC_000913/3540247‑3540441 | ctTGGCATGTTACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCa < 2:509880/100‑1 (MQ=255) ctTGGCATGTTACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCa < 2:528699/100‑1 (MQ=255) tGTTACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCaaaaagat > 2:316198/1‑97 (MQ=255) gTTACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCaaaaagatc < 1:964916/100‑5 (MQ=255) ttACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCt < 1:55260/100‑1 (MQ=255) aCCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTgg < 1:2153743/100‑1 (MQ=255) ccTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGc > 1:846248/1‑100 (MQ=255) cTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGcc < 2:496687/100‑1 (MQ=255) ggCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCtt > 1:1228293/1‑100 (MQ=255) ggCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCtt > 2:541163/1‑100 (MQ=255) ctcctcTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGCGCCTGGTATTACGC‑AAAAAGATCTGGCCttat > 1:8111/1‑100 (MQ=255) ctcctcTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCttat > 2:1335534/1‑100 (MQ=255) cctcTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCttatta > 2:581229/1‑100 (MQ=255) ctctTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCt > 1:423686/1‑94 (MQ=255) ctctTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAg > 1:2035118/1‑100 (MQ=255) tctTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGa < 2:2089688/100‑1 (MQ=255) tctTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCT‑AAAATAAAAAATAAAGATCTGGCCTTATTAGa < 2:1428782/100‑1 (MQ=255) ttttAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAACCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAg < 1:742034/100‑1 (MQ=255) cgatctgtgGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGt < 2:639436/95‑1 (MQ=255) tAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTgg < 2:328236/100‑1 (MQ=255) tAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTgg < 2:869801/100‑1 (MQ=255) aaTGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCAAAAAAGATCTGGCCTTATTAGAAGTgg > 2:845243/1‑100 (MQ=255) aaTGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGa < 1:581230/100‑1 (MQ=255) tgtgGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAg < 1:1761460/100‑1 (MQ=255) gtggtgCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGtagatcg > 1:639437/1‑94 (MQ=255) gtggtgCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGc > 1:450392/1‑100 (MQ=255) tggtgCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCg < 1:1247959/100‑1 (MQ=255) ggtgCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCgg > 2:1256650/1‑100 (MQ=255) gcgcGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGttt > 1:1282348/1‑100 (MQ=255) cgcgTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTc > 1:1232335/1‑100 (MQ=255) gcgTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTcc < 2:2081209/100‑1 (MQ=255) gcgTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTcc > 2:1513137/1‑100 (MQ=255) gcgTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTcc < 1:148544/100‑1 (MQ=255) gatctgCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTcc < 2:766360/95‑1 (MQ=255) gTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTg < 2:1833500/100‑1 (MQ=255) tCGCTCCGCTCGGCGACGCCATTAATATCGAAAGCCGTCGTGTGAGCCTGGTATTACGCAAAAAAGATCTGGCCTTCTTAGGAGTGGAAGCGGTTTCCTg < 2:464252/100‑1 (MQ=255) tCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGt > 2:2335735/1‑100 (MQ=255) tCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACG‑TAAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGt < 2:1279700/100‑1 (MQ=255) cGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGtt < 2:2271579/100‑1 (MQ=255) gCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTccagatc > 1:766361/1‑95 (MQ=255) tCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAAt > 1:196094/1‑100 (MQ=255) tCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAAt < 2:486994/100‑1 (MQ=255) ccACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATa > 2:1876254/1‑100 (MQ=255) cACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATAc > 1:2025895/1‑100 (MQ=255) cGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTg < 2:1483825/100‑1 (MQ=255) aCCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATaac < 1:1618039/100‑1 (MQ=255) ccATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATaacaac > 1:1567365/1‑100 (MQ=255) cATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAacaaca < 1:1006967/100‑1 (MQ=255) cATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAacaaca > 1:579114/1‑100 (MQ=255) aTTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAAcaacaa < 2:1228984/100‑1 (MQ=255) aTTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAAcaacaa < 2:8111/100‑1 (MQ=255) tCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATg < 2:2146478/100‑1 (MQ=255) tatCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGaaa > 2:1071463/1‑100 (MQ=255) tatCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGaaa < 2:423684/100‑1 (MQ=255) atCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGaaaa > 1:291229/1‑100 (MQ=255) cGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGaaaaaa > 2:1127986/1‑100 (MQ=255) cGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGaaaaaa > 2:848071/1‑100 (MQ=255) cGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGaaaaaa > 2:2279347/1‑100 (MQ=255) cGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGaaaaaa > 2:952560/1‑100 (MQ=255) gAAACCCGTCGTGTTAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAAt < 1:573582/100‑1 (MQ=255) gAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAAt > 2:490318/1‑100 (MQ=255) gAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAAt > 2:2282228/1‑100 (MQ=255) gAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAAt > 1:1330551/1‑100 (MQ=255) aaaCCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAAtt < 1:490320/100‑1 (MQ=255) aaCCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTa > 1:1222241/1‑100 (MQ=255) cccGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAAc < 1:58390/100‑1 (MQ=255) ccGTTGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAAcc < 2:751066/100‑1 (MQ=255) tcgtGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCAtt < 2:450390/100‑1 (MQ=255) cgtGTGAGCCTGGTATTACGCAAAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCAtt < 1:637245/100‑1 (MQ=255) cgtGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTg > 1:170957/1‑100 (MQ=255) cgtGTGAGCCTAATAATAAGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTg < 2:1282345/100‑1 (MQ=255) gtgtGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTgg < 1:1707702/100‑1 (MQ=255) gtgtGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAATGTAAGCGGTTTTCTGTTTATACGGTGATAAAAACAATGAAGAAATTAACCATTg < 2:1449660/99‑1 (MQ=255) tgAGCCTGGTATTACGC‑AAAATGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTCAATACGGTGATAAAAAAAAAAAAAAAATTAAcc < 2:1405874/92‑1 (MQ=255) tgAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCtt < 2:1567361/100‑1 (MQ=255) aGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTaa > 1:248698/1‑100 (MQ=255) tGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAATTgg < 2:1228290/100‑1 (MQ=255) ggTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAATTGGt > 1:1819757/1‑100 (MQ=255) aTTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAATTGGTAAt < 1:1256653/100‑1 (MQ=255) ttACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAATTGGTAATc < 2:119493/100‑1 (MQ=255) tACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAATTGGTAATcc > 2:641097/1‑100 (MQ=255) tACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAATTGGTAATcc < 2:1244947/100‑1 (MQ=255) tACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAATTGGTAATcc < 2:1554839/100‑1 (MQ=255) | CTTGGCATGTTACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCAAAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAATTGGTAATCC > NC_000913/3540247‑3540441 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |