| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,191,432 | C→T | G72S (GGC→AGC) | yehC ← | putative periplasmic pilin chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,191,432 | 0 | C | T | 97.6% | 286.8 / ‑2.4 | 83 | G72S (GGC→AGC) | yehC | putative periplasmic pilin chaperone |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (37/44); total (38/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
ATTTTTACTTGCTGCCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCCATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCGGGTAAATAATGCGCG > NC_000913/2191335‑2191527 | aTTTTTACTTGCTGCCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCtat < 1:1676640/100‑1 (MQ=255) ttttACTTGCTGCCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCtatca < 1:1654182/100‑1 (MQ=255) tttACTTGCTGCCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCtatcat < 1:563307/100‑1 (MQ=255) tACTTGCTGCCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTAtcatca < 1:1173531/100‑1 (MQ=255) aCTTGCTGCCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCaa < 1:526754/100‑1 (MQ=255) aCTTGCTGCCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCaa > 1:1980071/1‑100 (MQ=255) ttGCTGCCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATc < 1:351268/100‑1 (MQ=255) tgctgcCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATcc < 1:1094771/100‑1 (MQ=255) tgctgcCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATcc < 1:539413/100‑1 (MQ=255) tgctgcCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATcc < 1:2133870/100‑1 (MQ=255) tgctgcCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATcc < 1:2132154/100‑1 (MQ=255) tgctgcCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATcc > 1:1764148/1‑100 (MQ=255) tgcCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACg > 1:876669/1‑100 (MQ=255) tgcCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACg > 1:373329/1‑100 (MQ=255) tgcCCGGAATTTGCCCCTATTGTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACg < 2:1774163/100‑1 (MQ=255) gcCCGGAATTTGCCCCTATTTTTGTTTTTTTTTTCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGc > 2:1655320/1‑100 (MQ=255) gcCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGc > 2:581327/1‑100 (MQ=255) cccGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGcc < 2:1005206/100‑1 (MQ=255) cccGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGcc < 2:1764143/100‑1 (MQ=255) aaTTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTgcag < 2:1866381/100‑1 (MQ=255) aTTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTgcagc < 1:985360/100‑1 (MQ=255) aTTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTgcagc > 1:837921/1‑100 (MQ=255) tGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCagcagc > 1:897483/1‑100 (MQ=255) gCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCg < 1:1343110/100‑1 (MQ=255) ccTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCgaag < 2:595090/100‑1 (MQ=255) ccTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCgaag > 1:2162478/1‑100 (MQ=255) aTTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAAc < 1:548872/100‑1 (MQ=255) ttttGCCCCTGGTGGCGTTAACATGCAAGGAACCTGACTTTTTTCTGGTGGTAATGACCTATCGCTATCATCCCTCCACGCCTGCAGCAGCGAAGAACgg < 1:583627/100‑1 (MQ=255) ttttGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACgg > 1:1896915/1‑100 (MQ=255) tttGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGt < 1:920395/100‑1 (MQ=255) ttGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTTTTTTTTTTATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGtt > 2:795868/1‑100 (MQ=255) gCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTc > 1:1189727/1‑100 (MQ=255) gCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTc > 1:2274330/1‑100 (MQ=255) gCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTc > 1:2273492/1‑100 (MQ=255) gCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTc > 2:1687547/1‑100 (MQ=255) ccACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCCATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTcc > 2:838558/1‑100 (MQ=255) aCTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCt < 2:1426671/100‑1 (MQ=255) aCTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCt < 2:1426679/100‑1 (MQ=255) cTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTg < 2:214533/100‑1 (MQ=255) cTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTg < 1:903744/100‑1 (MQ=255) tggtggCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTgg < 2:1299405/100‑1 (MQ=255) ngtggCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGt > 1:584711/2‑100 (MQ=255) ggtggCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGt < 1:1178316/100‑1 (MQ=255) gtggCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGtt < 1:523006/100‑1 (MQ=255) tggCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTtc > 2:2128293/1‑100 (MQ=255) ggCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTtca > 1:841944/1‑100 (MQ=255) ggCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTtca > 1:934888/1‑100 (MQ=255) gTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTtcatca > 1:324132/1‑100 (MQ=255) tAACATGAAAGGAACCTGAATTTTTTCTTTTTTTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAAc > 2:2233061/1‑100 (MQ=255) tAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAAc < 2:75934/100‑1 (MQ=255) tAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAAc > 2:1017110/1‑100 (MQ=255) cgatctGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAAc < 1:480557/95‑1 (MQ=255) aaCATGAAAGGAACCTGAATTTTTTTTTTTTTTTATGACGTATCGCTATCATCAATCCACGCCTTCAGCAGCGAAGAACGGTTTGCCTTGTTCATCAACt > 2:925425/1‑100 (MQ=255) cATGAAAGGAACCTGAATTTTTTTTTTTTTTTTTGACGTATAGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGTTTCATCAACTGc > 2:1184648/1‑100 (MQ=255) cATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGc < 1:291152/100‑1 (MQ=255) tGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCAc > 1:119138/1‑100 (MQ=255) tGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCAc > 2:774913/1‑100 (MQ=255) tGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCAc > 2:2157680/1‑100 (MQ=255) tGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCAc > 1:1700725/1‑100 (MQ=255) gAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAAcagatcg > 2:480555/1‑94 (MQ=255) gAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCCATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCAcc < 1:2050817/100‑1 (MQ=255) aaaGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCa > 1:107700/1‑100 (MQ=255) aaaGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCa < 1:1626687/100‑1 (MQ=255) aGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATc < 2:819966/100‑1 (MQ=255) ggAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCa < 2:2273484/100‑1 (MQ=255) ggAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCa < 2:2274322/100‑1 (MQ=255) gAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCAc < 1:1212713/100‑1 (MQ=255) ccTGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCActtc < 1:1687552/100‑1 (MQ=255) tGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCActtctt < 1:581328/100‑1 (MQ=255) tGAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCActtctt > 1:835082/1‑100 (MQ=255) gAATTTTTTCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCttt < 2:2103302/100‑1 (MQ=255) tttttCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTAttn < 2:584710/100‑2 (MQ=255) tttCTGGTGGTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTc < 2:1700720/100‑1 (MQ=255) tggtggTAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGcc > 1:987184/1‑100 (MQ=255) gtggtAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCgg < 1:2237292/100‑1 (MQ=255) gtggtAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCgg < 1:2157687/100‑1 (MQ=255) gtggtAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCgg > 1:62800/1‑100 (MQ=255) gtggtAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCgg < 1:774914/100‑1 (MQ=255) tggtAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCggg > 2:1757287/1‑100 (MQ=255) gtAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCGGGTa < 2:612070/100‑1 (MQ=255) gtAATGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCGGGTa < 2:897481/100‑1 (MQ=255) aTGACGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCGGGTAaat < 2:2239076/100‑1 (MQ=255) cGTATCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCGGGTAAATAATg > 1:2247274/1‑100 (MQ=255) aTCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCGGGTAAATAATgcgc > 2:2325692/1‑100 (MQ=255) aTCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCGGGTAAATAATgcgc > 2:2324460/1‑100 (MQ=255) tCGCTATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCGGGTAAATAATGcgcg < 2:1616318/100‑1 (MQ=255) | ATTTTTACTTGCTGCCCGGAATTTGCCCCTATTTTTGCCACTGGTGGCGTTAACATGAAAGGAACCTGAATTTTTTCTGGTGGTAATGACGTATCGCCATCATCAATCCACGCCTGCAGCAGCGAAGAACGGTTTCCCTGGTTCATCAACTGCACCATCACTTCTTTATTTTCTGCCGGGTAAATAATGCGCG > NC_000913/2191335‑2191527 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |