New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2219659	NA (NA)	16 (0.120)	10/162	NT	NA	intergenic (‑178/+33)	osmF/bglX	putative ABC transporter periplasmic binding protein/beta‑D‑glucoside glucohydrolase, periplasmic
	?	NC_000913	= 2219682	NA (NA)					intergenic (‑201/+10)	osmF/bglX	putative ABC transporter periplasmic binding protein/beta‑D‑glucoside glucohydrolase, periplasmic

CGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAaagggcgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2219562‑2219659 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGGGCGC‑G‑ACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCA  <  NC_000913/2219682‑2219576                                                                                                                                                                                                                 CGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAA                                                                                                             <  1:1181715/100‑1  GGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAG                                                                                                            >  2:343252/1‑100  GGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAG                                                                                                            <  2:1576544/100‑1   GAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGG                                                                                                           <  2:933544/100‑1    AAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGG                                                                                                          <  1:3356939/100‑1      GGATTCAGTTGCAGAATCAGATAAATACTTAAGGGGCAGAGTCGGTCGGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCG                                                                                                        <  2:380880/100‑1      GGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCG                                                                                                        <  1:3911096/100‑1       GATTCAGTTGCAGAATCAGATAAATACTTAAGTGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGC                                                                                                       <  1:1377483/100‑1       GATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCCTATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGCCG                                                                                                        <  2:2409410/99‑1       GATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGC                                                                                                       <  2:3823696/100‑1       GATTCAGTTGCAGAACCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGC                                                                                                       <  1:4071859/100‑1               TGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGC‑G‑ACGTTTG                                                                                             <  1:1898905/100‑1                    AATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGC‑G‑ACGTTTGCGCCC                                                                                        <  1:3220020/100‑1                      ttAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAATGGCGC‑G‑ACGTTTGCGCCCTT                                                                                      <  2:2514110/98‑1                      TCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGC‑G‑ACGTTTGCGCCCTT                                                                                      <  1:1251270/100‑1                      TCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGC‑G‑ACGTTTGCGCCCTT                                                                                      <  2:1120666/100‑1                       CAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGC‑G‑ACGTTTGCGCCCTTT                                                                                     <  1:1604611/100‑1                       CAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGC‑G‑ACGTTTGCGCCCTTT                                                                                     <  1:889582/100‑1                        AGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGC‑G‑ACGTTTGCGCCCTTTG                                                                                    <  1:2728322/100‑1                           TAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCCTATCCGGCCTACAAAGGGCGC‑G‑ACGTTTGCGCCCTTTGTAG                                                                                 <  2:1814569/100‑1                                                                                         CCGGCCTACAAAGGGCGCAA‑ACG‑TCGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGT                   >  1:1673897/1‑100                                                                                         CCGGCCTACAAAGGGCGCAA‑ACG‑TCGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGT                   >  1:2118920/1‑100                                                                                          CGGCCTACAAAGGGCGCAA‑ACG‑TCGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTA                  >  2:4109423/1‑100                                                                                            GCCTACAAAGGGCGCAA‑ACG‑TCGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATT                >  1:1152970/1‑100                                                                                            GCCTACAAAGGGCGC‑A‑AACGTCGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCGTCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATT                >  1:1848440/1‑100                                                                                             CCTACAAAGGGCGCAA‑ACG‑TCGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTT               >  1:842594/1‑100                                                                                             CCTACAAAGGGCGC‑AAACG‑TCGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTT               >  1:2021199/1‑100                                                                                              CTACAAAGGGCGCAA‑ACG‑TCGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTA              >  2:1665329/1‑100                                                                                                    AGGGCGC‑G‑ACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGAT        >  2:2648388/1‑100                                                                                                    AGGGCGC‑G‑ACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCCGACCGAATATGCCTCTTAAGTATTTATCTGAT        <  1:3920010/100‑1                                                                                                     GGGCGC‑G‑ACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATT       >  1:1245748/1‑100                                                                                                      GGCGC‑G‑ACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTC      <  1:515743/100‑1                                                                                                        CGC‑G‑ACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTG    <  1:3672417/100‑1                                                                                                         GC‑G‑ACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCGCTTAAGAATTTATCTGACTCT     >  2:1801754/1‑98                                                                                                         GC‑G‑ACGTTCGCGCCCTCTGTAGGCCAGATAAGGCGCTATCGCCGCATCAGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCT           <  2:813252/92‑1                                                                                                          C‑G‑ACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCA  >  2:4057734/1‑100                                                                                                                                                                                                                 CGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAaagggcgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2219562‑2219659 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGGGCGC‑G‑ACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCA  <  NC_000913/2219682‑2219576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.